ViewGene
Locus Name:
GeneID:
Location:

GeneID:3144
TrivialName: PA14_12940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12940
PAO1 Ortholog Locus:PA3937
Sequence Length:792
Protein Length:263
Start: 1108535
Stop: 1109326
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07324.1|AE004811_7 (AE004811) probable ATP-binding component of ABC taurine transporter [Pseudomonas aeruginosa PAO1]
Identities = 260/263 (98%), Positives = 262/263 (99%)
Sequence:
ATGAGCCGTCTGACGGCCGAGGCGATCAGCCTCTCATTCGAACAGCGCGGCCAGCGCCGCGCCATCCTCCGC
GATCTCAGCCTGGGCCTTGCCAAGGGCGAGTCGCTGGTGGTGCTGGGTCCTTCGGGCTGCGGCAAGTCGACA
CTGCTGAACATCCTCGCCGGTTTCCAGACGCCGGACCAGGGACGCGTGCAGATCGACGGCCGGACACTCGAA
GGGCCTGGCGGCGAGCGCGGCGTGGTATTCCAGGACGACGCCCTGATGCCCTGGCTCAACGCCCTCGACAAC
GTCGCCCTGGGCCTGCGCATCCGTGGCCTGGGCAAGGCCGAGCGCACCGCGCGGGCGCGCCAGGTCCTGCAA
CTGGTGGGCCTCCAGGAGTACGCCGAGCAGTCCGTCGCCGAGCTCTCCGGCGGCCAGCGGCAACGCCTCGGG
CTGGCACGCGCGCTGGCGGTCGAGCCGGACTTCCTGCTGCTCGACGAGCCGTTCGGCGCGCTCGACGCGCTG
ACCCGCGAGCGCATGCAGGTGCTCCTGCTGGACCTGTGGAAGCAGACCGGCAAGGGCCTCTTCCTGATCACC
CACAGCGTCGACGAAGCCCTGTTCCTGGCTACCGACCTGGTGGTGATGGACGGCCCGCCGGCGCGCATCGTC
AAGCGCCTGCCGGTGGACTTCGCGCGGCGTTACGCCGCCGGCGAAACGGTGCGTTCGATCAAGTCCGATCCC
GAGTTCGGCCGTTTGCGCCAGGCGTTGCTGGACGAATTCCTCGATGTCGCGGAGGCCGAACATGCCCACTGA
Translation:
MSRLTAEAISLSFEQRGQRRAILRDLSLGLAKGESLVVLGPSGCGKSTLLNILAGFQTPDQGRVQIDGRTLE
GPGGERGVVFQDDALMPWLNALDNVALGLRIRGLGKAERTARARQVLQLVGLQEYAEQSVAELSGGQRQRLG
LARALAVEPDFLLLDEPFGALDALTRERMQVLLLDLWKQTGKGLFLITHSVDEALFLATDLVVMDGPPARIV
KRLPVDFARRYAAGETVRSIKSDPEFGRLRQALLDEFLDVAEAEHAH*
AnnotationID:3152GeneID:3144
AnnotatorUID: danlee
Modification Date/Time: 2006-04-07 14:02:06
Gene Name:
Confidence Code:3
GeneProduct:probable ATP-binding component of ABC taurine tran
Cell Localization:()
Synonyms:PA3937
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4525,COG1116,COG3842
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAC73469.1| (AE000143) taurine ATP-binding component
of a transport system [Escherichia coli K12]
Length: 263
Identity: 51.33%
Similarity: 70.72%
Gaps: 8
Score: 689.0






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6291




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23433




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3144
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5046
                           PA3937_tr
                           translation of PA3937
                           263
                           98.85
                           99.61
                           0
                           1298.0
     

     
     
141774
                           gb|AAG07324.1|AE004811_7
                           (AE004811) probable ATP-binding component of ABC taurine transporter [Pseudomonas aeruginosa PAO1]
                           263
                           98.85
                           99.61
                           0
                           1298.0
     

     
     
141786
                           gb|AAQ60525.1|
                           (AE016920) taurine ATP-binding component of a transport system [Chromobacterium violaceum ATCC 12472]
                           264
                           53.78
                           68.93
                           4
                           672.0
     

     
     
141781
                           gb|AAO58746.1|
                           (AE016875) taurine ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           264
                           52.27
                           70.45
                           4
                           689.0
     

     
     
141778
                           dbj|BAC00967.1|
                           (AB086390) ABC-type transporter ATP-binding component [Pseudomonas putida]
                           265
                           52.07
                           71.32
                           5
                           695.0
     

     






      

          
GC ORFID: 46146How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3937Glimmer Score: 

          
Start: 3845403Stop: 3844612

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3937 translation of PA3937Homolog Bit Score 504.0

          
Other Homologs:  t_PA2294 (ORF: BLASTX 212.0), t_PA2329 (ORF: BLASTX 175.0), t_PA2308 (ORF: BLASTX 167.0), psyr_15may02_Scaffold2_revised_gene3249 (ORF: BLASTX 163.0), t_PA3442 (ORF: BLASTX 160.0), psyr_15may02_Scaffold6_revised_gene6502 (ORF: BLASTX 154.0), psyr_15may02_Scaffold8_revised_gene7773 (ORF: BLASTX 153.0), psyr_15may02_Scaffold7_revised_gene7016 (ORF: BLASTX 142.0), t_PA3447 (ORF: BLASTX 136.0), t_PA3937 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGTCTGACGGCCGAGGCGATCAGCCTCTCATTCGAACAGCGCGGCCAGCGCCGCGCCATCCTCCGC 
GATCTCAGCCTGGGCCTTGCCAAGGGCGAGTCGCTGGTGGTGCTGGGTCCTTCGGGCTGCGGCAAGTCGACA 
CTGCTGAACATCCTCGCCGGTTTCCAGACGCCGGACCAGGGACGCGTGCAGATCGACGGCCGGACACTCGAA 
GGGCCTGGCGGCGAGCGCGGCGTGGTATTCCAGGACGACGCCCTGATGCCCTGGCTCAACGCCCTCGACAAC 
GTCGCCCTGGGCCTGCGCATCCGTGGCCTGGGCAAGGCCGAGCGCACCGCGCGGGCGCGCCAGGTCCTGCAA 
CTGGTGGGCCTCCAGGAGTACGCCGAGCAGTCCGTCGCCGAGCTCTCCGGCGGCCAGCGGCAACGCCTCGGG 
CTGGCACGCGCGCTGGCGGTCGAGCCGGACTTCCTGCTGCTCGACGAGCCGTTCGGCGCGCTCGACGCGCTG 
ACCCGCGAGCGCATGCAGGTGCTCCTGCTGGACCTGTGGAAGCAGACCGGCAAGGGCCTCTTCCTGATCACC 
CACAGCGTCGACGAAGCCCTGTTCCTGGCTACCGACCTGGTGGTGATGGACGGCCCGCCGGCGCGCATCGTC 
AAGCGCCTGCCGGTGGACTTCGCGCGGCGTTACGCCGCCGGCGAAACGGTGCGTTCGATCAAGTCCGATCCC 
GAGTTCGGCCGTTTGCGCCAGGCGTTGCTGGACGAATTCCTCGATGTCGCGGAGGCCGAACATGCCCACTGA