ViewGene
Locus Name:
GeneID:
Location:

GeneID:3143
TrivialName: PA14_21590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21590
PAO1 Ortholog Locus:PA3282
Sequence Length:735
Protein Length:244
Start: 1871326
Stop: 1872060
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06670.1|AE004750_8 (AE004750) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 239/244 (97%), Positives = 241/244 (98%)
Sequence:
ATGAACCACACGACCTTGCAACGGCGTTTCGCCGCACGTATCCGCGATCCGCAGCAGGCCTTGCCGCCCGGC
ATCGCGACGGAGCGCATGGCGATCTACGAGGAACTGTTCTTCAACAACCTGGACGGTTTCATCAGCAGCGGT
TTCCCGGTCCTGCGCCGGTTGTTCGACGAGCCGCGCTGGCATCGCCTGGTGCGTGCCTTCATGCGCGAGCAT
CGCTGCCGCACACCGTACTTCAGCCAATTGGGCGAGGAGTTCATCGGCTGGCTGCAGGACGGCTACCGCGCG
GAGGAGGGCGATCCGCCCTTTCTGCTGGAGCTGGCTCACTACGAGTGGGTCGAGCTGGCCCTGTCGCTGGCC
GAGGCGCCTGTCGAGACGCTGCCGCAGGCCTGGTCGTGGTCGCCACTGGCCTGGCCGCTGGCCTATCGCTGG
CCGGTCCATCGCCTGGGGCCGAGCCATCGGCCGGTGGAGCCGCCGGCCGAGCCGACCTGCCTGCTGGTCTGG
CGCGATCCGGCGGAGCGGGTGCGCTTCCTGCACCTGTCGCCATTCGCCTATCGCCTCGCGCAGCGCCTGAGC
GAGGAGGGGGAGGCGTCGGTGACGCTGCTGCCGTTGTTGCGCGAGTTGGCCGGAAGCTGCGGCCTGAGCGCC
GACGCGGAGTATTTCGAAAATGCCTTCGCCTTGCTGGAGGACTGGCACGCCCAGGGCATCCTCATGGGCGAG
GGCGCTCTGGAGTGA
Translation:
MNHTTLQRRFAARIRDPQQALPPGIATERMAIYEELFFNNLDGFISSGFPVLRRLFDEPRWHRLVRAFMREH
RCRTPYFSQLGEEFIGWLQDGYRAEEGDPPFLLELAHYEWVELALSLAEAPVETLPQAWSWSPLAWPLAYRW
PVHRLGPSHRPVEPPAEPTCLLVWRDPAERVRFLHLSPFAYRLAQRLSEEGEASVTLLPLLRELAGSCGLSA
DAEYFENAFALLEDWHAQGILMGEGALE*
AnnotationID:3151GeneID:3143
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 06:06:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3282
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6289




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23431




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32266




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3143_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3143
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5045
                           PA3282_tr
                           translation of PA3282
                           244
                           97.95
                           98.77
                           0
                           1297.0
     

     
     
141772
                           gb|AAG06670.1|AE004750_8
                           (AE004750) hypothetical protein PA3282 [Pseudomonas aeruginosa PAO1]
                           244
                           97.95
                           98.77
                           0
                           1297.0
     

     
     
141773
                           gb|AAN68011.1|AE016434_2
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           254
                           40.15
                           55.51
                           33
                           424.0
     

     






      

          
GC ORFID: 46145How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3282Glimmer Score: 

          
Start: 3082605Stop: 3081871

          
Length: 735


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3282 translation of PA3282Homolog Bit Score 504.0

          
Other Homologs:  t_PA3282 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCACACGACCTTGCAACGGCGTTTCGCCGCACGTATCCGCGATCCGCAGCAGGCCTTGCCGCCCGGC 
ATCGCGACGGAGCGCATGGCGATCTACGAGGAACTGTTCTTCAACAACCTGGACGGTTTCATCAGCAGCGGT 
TTCCCGGTCCTGCGCCGGTTGTTCGACGAGCCGCGCTGGCATCGCCTGGTGCGTGCCTTCATGCGCGAGCAT 
CGCTGCCGCACACCGTACTTCAGCCAATTGGGCGAGGAGTTCATCGGCTGGCTGCAGGACGGCTACCGCGCG 
GAGGAGGGCGATCCGCCCTTTCTGCTGGAGCTGGCTCACTACGAGTGGGTCGAGCTGGCCCTGTCGCTGGCC 
GAGGCGCCTGTCGAGACGCTGCCGCAGGCCTGGTCGTGGTCGCCACTGGCCTGGCCGCTGGCCTATCGCTGG 
CCGGTCCATCGCCTGGGGCCGAGCCATCGGCCGGTGGAGCCGCCGGCCGAGCCGACCTGCCTGCTGGTCTGG 
CGCGATCCGGCGGAGCGGGTGCGCTTCCTGCACCTGTCGCCATTCGCCTATCGCCTCGCGCAGCGCCTGAGC 
GAGGAGGGGGAGGCGTCGGTGACGCTGCTGCCGTTGTTGCGCGAGTTGGCCGGAAGCTGCGGCCTGAGCGCC 
GACGCGGAGTATTTCGAAAATGCCTTCGCCTTGCTGGAGGACTGGCACGCCCAGGGCATCCTCATGGGCGAG 
GGCGCTCTGGAGTGA