ViewGene

Locus Name:
GeneID:
Location:

GeneID:3142
TrivialName: PA14_23950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23950
PAO1 Ortholog Locus:PA3106
Sequence Length:768
Protein Length:255
Start: 2081106
Stop: 2081873
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06494.1|AE004735_1 (AE004735) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 253/255 (99%), Positives = 255/255 (100%)
Sequence:
GTGATCGAGCCCAACCTGCGAGGCAACGGCAAGGTCGCCCTGGTCACCGGGGCGGCCCGGGGCATTGGCCTG
GGCATCAGTGCCTGGCTGATCGCCGAGGGCTGGCAGGTAGTGCTGGCCGACAACGACCGTGAACGCGGTGCC
AGGGTGGCCGAGGCGCTGGGCGAGCACGCCTGGTTCGTGGCCATGGACGTGGCCCAGGAGGGCCAGGTGGCG
ATGAGCGTGGCCGAGGTGCTCGGTCAGTTCGGCCGCCTCGACGGCCTGGTCTGCAACGCCGCCATCGCCAAT
CCGCGCAATACGCCGCTGGAGGCGCTGAGCCTCGGCGAGTGGACCCGGACCCTGGCGGTCAACCTGACCGGT
CCGATGCTGCTGGCCAAGTACTGCACGCCTTATCTGCGCGCGCACAACGGCGCCATCGTCAACATCGCCTCG
ACTCGTGCCCACCAGTCGGAGCCTGACTCCGAGGCCTACGCCGCGAGCAAGGGCGGGTTGCTGGCGCTGACC
CATGCCCTGGCCGCCAGCCTGGGCCCGGAGATCCGTGTCAATGCGCTCAGCCCCGGCTGGATCGATACCCGC
GAGGCCGCCGAGCGCGAGGCTGCGCCGCTGACCGAGCTGGACCACGACCAACACCTGGTCGGCCGGGTCGGA
ACGGTGGAGGATGTCGCGTCGCTGGTGGCCTGGCTGCTCTCCGAGGACGCCGGTTTCGTCACCGGCCAGGAA
TTCCTGGTCGATGGCGGCATGACCCGGAAAATGGTCTACCTCGACTGA
Translation:
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAEALGEHAWFVAMDVAQEGQVA
MSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYLRAHNGAIVNIAS
TRAHQSEPDSEAYAASKGGLLALTHALAASLGPEIRVNALSPGWIDTREAAEREAAPLTELDHDQHLVGRVG
TVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMVYLD*
AnnotationID:3150GeneID:3142
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:52
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:pfam00106,COG1028,COG4221,COG0300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67616.1|AE016391_7 (AE016781) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas putida KT2440]
          Length = 257

 Score =  388 bits (997), Expect = e-107
 Identities = 187/245 (76%), Positives = 214/245 (87%)

>gb|AAM42906.1| (AE012485) oxidoreductase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 268

 Score =  225 bits (573), Expect = 2e-58
 Identities = 130/252 (51%), Positives = 165/252 (65%), Gaps = 9/252 (3%)

>gb|AAD35113.1|AE001690_7 (AE001690) oxidoreductase, short chain dehydrogenase/reductase
           family [Thermotoga maritima]
          Length = 256

 Score =  199 bits (505), Expect = 2e-50
 Identities = 120/256 (46%), Positives = 157/256 (61%), Gaps = 17/256 (6%)
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  162 bits (412), Expect = 3e-41
Identities = 97/249 (38%), Positives = 136/249 (54%), Gaps = 16/249 (6%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases)
CD-Length = 251 residues, 100.0% aligned
Score =  154 bits (389), Expect = 1e-38
Identities = 108/254 (42%), Positives = 141/254 (55%), Gaps = 14/254 (5%)

COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity 
CD-Length = 246 residues,  90.7% aligned
Score =  113 bits (285), Expect = 2e-26
Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 5/225 (2%)

COG0300, DltE, Short-chain dehydrogenases of various substrate specificities 
CD-Length = 265 residues,  80.4% aligned
Score =  111 bits (280), Expect = 7e-26
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 13/220 (5%)
Genomic Context:
Comment:
ReferenceID:14745
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23429
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32419
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3142_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3142

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5044 PA3106_tr translation of PA3106 255 99.21 99.99 0 1298.0
141750 gb|AAG06494.1|AE004735_1 (AE004735) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1] 255 98.82 99.99 0 1295.0
141751 emb|CAA48583.1| (X68594) orfX [Pseudomonas aeruginosa] 255 98.82 99.99 0 1295.0
141752 gb|AAN67616.1|AE016391_7 (AE016781) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas putida KT2440] 260 73.07 84.23 8 990.0
141753 gb|AAO57278.1| (AE016869) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000] 255 70.58 79.21 14 928.0
GC ORFID: 46144How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3106Glimmer Score:
Start: 2872825Stop: 2872058
Length: 768
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3106 translation of PA3106Homolog Bit Score 504.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5955 (ORF: BLASTX 375.0), t_PA3106 (ORF: GLIMMER)
GC ORF Sequence
GTGATCGAGCCCAACCTGCGAGGCAACGGCAAGGTCGCCCTGGTCACCGGGGCGGCCCGGGGCATTGGCCTG
GGCATCAGTGCCTGGCTGATCGCCGAGGGCTGGCAGGTAGTGCTGGCCGACAACGACCGTGAACGCGGTGCC
AGGGTGGCCGAGGCGCTGGGCGAGCACGCCTGGTTCGTGGCCATGGACGTGGCCCAGGAGGGCCAGGTGGCG
ATGAGCGTGGCCGAGGTGCTCGGTCAGTTCGGCCGCCTCGACGGCCTGGTCTGCAACGCCGCCATCGCCAAT
CCGCGCAATACGCCGCTGGAGGCGCTGAGCCTCGGCGAGTGGACCCGGACCCTGGCGGTCAACCTGACCGGT
CCGATGCTGCTGGCCAAGTACTGCACGCCTTATCTGCGCGCGCACAACGGCGCCATCGTCAACATCGCCTCG
ACTCGTGCCCACCAGTCGGAGCCTGACTCCGAGGCCTACGCCGCGAGCAAGGGCGGGTTGCTGGCGCTGACC
CATGCCCTGGCCGCCAGCCTGGGCCCGGAGATCCGTGTCAATGCGCTCAGCCCCGGCTGGATCGATACCCGC
GAGGCCGCCGAGCGCGAGGCTGCGCCGCTGACCGAGCTGGACCACGACCAACACCTGGTCGGCCGGGTCGGA
ACGGTGGAGGATGTCGCGTCGCTGGTGGCCTGGCTGCTCTCCGAGGACGCCGGTTTCGTCACCGGCCAGGAA
TTCCTGGTCGATGGCGGCATGACCCGGAAAATGGTCTACCTCGACTGA