ViewGene
Locus Name:
GeneID:
Location:

GeneID:3141
TrivialName: PA14_27780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27780
PAO1 Ortholog Locus:PA2811
Sequence Length:780
Protein Length:259
Start: 2408716
Stop: 2409495
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06199.1|AE004708_5 (AE004708) probable permease of ABC-2 transporter [Pseudomonas aeruginosa PAO1]
Identities = 258/259 (99%), Positives = 259/259 (100%)
Sequence:
ATGAGCAGCGAACTGAGCGCCAACCTGGTCGCCCTGAACACCATCGTCTACCGCGAGGTGCGCCGCTTCACC
CGGATCTGGCCGCAGACCCTGCTGCCGCCGGCGATCACCATGGTCCTGTACTTCGTGATCTTCGGCAATTTG
ATCGGCCGGCAGATCGGCGACATGGGCGGCTTCACCTACATGGAATACATCGTGCCCGGCCTGATCATGATG
TCGGTGATCACCAACGCCTACGGCAACGTGGTGTCGAGCTTCTTCGGCAGCAAGTTCCAGCGCTCGGTGGAG
GAACTGCTGGTGTCGCCGGTGTCGCCGCACACCATCCTCCTCGGCTACACCATCGGCGGCGTGCTGCGCGGC
CTGGCGGTGGGGGTGATCGTGACCCTGCTGTCGCTGTTCTTCACCAAGCTGCAGGTGCACCACCTGGGCATC
ACGGTACTGGTGGTGGTGCTTACCGCGACCATTTTCTCCCTGGGCGGTTTCATCAACGCGGTGTTCGCGCGC
AACTTCGACGACATCTCGATCATCCCGACCTTCGTGCTGACGCCGCTGACCTACCTGGGCGGGGTGTTCTAC
TCGATCAACCTGCTGCCGCCGTTCTGGCAGACCGTGTCGCTGGCCAACCCGATCCTGCACATGGTCAACGCC
TTCCGCTACGGCATCCTCGGCGTCTCCGACATTCGCATCGGCGTGGCCATCGGCTTCATGCTGCTGGCCACC
GCGGTGCTCTATCTCGGCTGCGTAAGGCTGCTGGTGAGCGGGCGCGGCATGCGCCAATGA
Translation:
MSSELSANLVALNTIVYREVRRFTRIWPQTLLPPAITMVLYFVIFGNLIGRQIGDMGGFTYMEYIVPGLIMM
SVITNAYGNVVSSFFGSKFQRSVEELLVSPVSPHTILLGYTIGGVLRGLAVGVIVTLLSLFFTKLQVHHLGI
TVLVVVLTATIFSLGGFINAVFARNFDDISIIPTFVLTPLTYLGGVFYSINLLPPFWQTVSLANPILHMVNA
FRYGILGVSDIRIGVAIGFMLLATAVLYLGCVRLLVSGRGMRQ*
AnnotationID:3149GeneID:3141
AnnotatorUID: diggins
Modification Date/Time: 2004-12-07 06:06:40
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, permease protein
Cell Localization:()
Synonyms:yadH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC-type multidrug transport system, permease component
Functional Category Confidence Code:5
COGs:COG0842
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67515.1|AE016380_3 (AE016781) ABC transporter, permease protein [Pseudomonas putida
           KT2440]
          Length = 259

 Score =  460 bits (1183), Expect = e-129
 Identities = 230/258 (89%), Positives = 245/258 (94%)

>gb|AAO57321.1| (AE016869) ABC transporter, permease protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 262

 Score =  452 bits (1164), Expect = e-127
 Identities = 222/258 (86%), Positives = 241/258 (93%)

>gb|AAM84368.1|AE013680_10 (AE013680) inner membrane permease of ABC transporter [Yersinia
           pestis KIM]
          Length = 256

 Score =  327 bits (838), Expect = 4e-89
 Identities = 152/249 (61%), Positives = 197/249 (79%)






 
Structural Features:
COG0842, ABC-type multidrug transport system, permease component 
[Defense mechanisms]






   
Genomic Context:






   
Comment:


















    ReferenceID:6285




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23427




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36256




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3141_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3141
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5043
                           PA2811_tr
                           translation of PA2811
                           259
                           99.61
                           99.99
                           0
                           1299.0
     

     
     
141717
                           gb|AAG06199.1|AE004708_5
                           (AE004708) probable permease of ABC-2 transporter [Pseudomonas aeruginosa PAO1]
                           259
                           99.61
                           99.99
                           0
                           1299.0
     

     
     
141718
                           gb|AAN67515.1|AE016380_3
                           (AE016781) ABC transporter, permease protein [Pseudomonas putida KT2440]
                           259
                           88.80
                           94.59
                           0
                           1182.0
     

     
     
141719
                           gb|AAO57321.1|
                           (AE016869) ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           262
                           84.73
                           91.98
                           3
                           1164.0
     

     
     
141724
                           dbj|BAC95529.1|
                           (AP005341) ABC-type multidrug transport system, permease component [Vibrio vulnificus YJ016]
                           266
                           62.40
                           75.93
                           9
                           829.0
     

     






      

          
GC ORFID: 46143How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2811Glimmer Score: 

          
Start: 2545210Stop: 2544431

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2811 translation of PA2811Homolog Bit Score 504.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2653 (ORF: BLASTX 454.0), t_PA2811 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGCGAACTGAGCGCCAACCTGGTCGCCCTGAACACCATCGTCTACCGCGAGGTGCGCCGCTTCACC 
CGGATCTGGCCGCAGACCCTGCTGCCGCCGGCGATCACCATGGTCCTGTACTTCGTGATCTTCGGCAATTTG 
ATCGGCCGGCAGATCGGCGACATGGGCGGCTTCACCTACATGGAATACATCGTGCCCGGCCTGATCATGATG 
TCGGTGATCACCAACGCCTACGGCAACGTGGTGTCGAGCTTCTTCGGCAGCAAGTTCCAGCGCTCGGTGGAG 
GAACTGCTGGTGTCGCCGGTGTCGCCGCACACCATCCTCCTCGGCTACACCATCGGCGGCGTGCTGCGCGGC 
CTGGCGGTGGGGGTGATCGTGACCCTGCTGTCGCTGTTCTTCACCAAGCTGCAGGTGCACCACCTGGGCATC 
ACGGTACTGGTGGTGGTGCTTACCGCGACCATTTTCTCCCTGGGCGGTTTCATCAACGCGGTGTTCGCGCGC 
AACTTCGACGACATCTCGATCATCCCGACCTTCGTGCTGACGCCGCTGACCTACCTGGGCGGGGTGTTCTAC 
TCGATCAACCTGCTGCCGCCGTTCTGGCAGACCGTGTCGCTGGCCAACCCGATCCTGCACATGGTCAACGCC 
TTCCGCTACGGCATCCTCGGCGTCTCCGACATTCGCATCGGCGTGGCCATCGGCTTCATGCTGCTGGCCACC 
GCGGTGCTCTATCTCGGCTGCGTAAGGCTGCTGGTGAGCGGGCGCGGCATGCGCCAATGA