ViewGene
Locus Name:
GeneID:
Location:

GeneID:3140
TrivialName: PA14_36680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36680
PAO1 Ortholog Locus:PA2156
Sequence Length:738
Protein Length:245
Start: 3266853
Stop: 3267590
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05544.1|AE004642_11 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 244/245 (99%), Positives = 245/245 (100%)
Sequence:
ATGATCCTGCCGCGCCTGCAGGTGCTGACGGTGAACACCCACAAGGGTTTCAACCCGTTCAATCGGCGCTTC
ATCCTGCCGGAGTTGCGCGAAGCGGTGCGCAGCGTCGGTGCCGACCTGGTGTTCCTCCAGGAGGTCCTCGGC
TCCCATAGCCTGCACGCCGCGCGCCTGCCGTCCTGGCCGCCGGCGCCGCAATACGAGTATCTGGCCGACAGC
ATGTGGCCGCAGTTCGCCTACGGGCGCAACGCGGTGTATCCCGAAGGCCACCATGGCAATGCCGTGCTCTCC
AAGCATCCGATCCTCGCCCACCGCAACCTCGACGTCTCGGTGGCGGGCAACGAGGAACGCGGCCTGTTGCAT
GCGGTGATCGACATCGGCCGTCCGCTGCACGCGGTCTGCGTGCACCTGGGATTGCGCGAGGCGCAGCGCCAG
CGCCAGTTGCAACTGCTCTGCGAGCTGGTGGCGGGCCTGCCGGAGCGCGAGCCGGTGGTGGTCGCCGGCGAC
TTCAACGACTGGCGCCAGCGCGCCGACCAACTGCTCGCCGGTTGCGGCCTGCGCGAAGTCTTCGTCGGCGCC
CAGGGCCGGCCGGCGCGCAGCTTCCCGGCGCGCTGGCCGGTGCTGCCGCTGGACCGCATCTACCTGCGCAAT
GCACGCGGGCGCCAGCCGCGCATCCTCTCGCGGCGGCCCTGGTCGCACCTGTCCGACCACCTGCCGCTGGCG
GTGGAGGTGGAGCCATGA
Translation:
MILPRLQVLTVNTHKGFNPFNRRFILPELREAVRSVGADLVFLQEVLGSHSLHAARLPSWPPAPQYEYLADS
MWPQFAYGRNAVYPEGHHGNAVLSKHPILAHRNLDVSVAGNEERGLLHAVIDIGRPLHAVCVHLGLREAQRQ
RQLQLLCELVAGLPEREPVVVAGDFNDWRQRADQLLAGCGLREVFVGAQGRPARSFPARWPVLPLDRIYLRN
ARGRQPRILSRRPWSHLSDHLPLAVEVEP*
AnnotationID:3148GeneID:3140
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:41
Gene Name:
Confidence Code:3
GeneProduct:putative metal-dependent hydrolase
Cell Localization:()
Synonyms:PA2156
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3568
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56979.1| (AE016868) endonuclease/exonuclease/phosphatase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 237

 Score =  329 bits (843), Expect = 1e-89
 Identities = 158/235 (67%), Positives = 185/235 (78%), Gaps = 2/235 (0%)






 
Structural Features:
COG3568, ElsH, Metal-dependent hydrolase
CD-Length = 259 residues,  97.3% aligned
Score =  214 bits (546), Expect = 8e-57
Identities = 108/255 (42%), Positives = 132/255 (51%), Gaps = 14/255 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6283




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23425




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32572




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3140_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3140
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5042
                           PA2156_tr
                           translation of PA2156
                           245
                           99.59
                           99.99
                           0
                           1297.0
     

     
     
141694
                           gb|AAG05544.1|AE004642_11
                           (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           245
                           99.59
                           99.99
                           0
                           1297.0
     

     
     
141695
                           gb|AAO56979.1|
                           (AE016868) endonuclease/exonuclease/phosphatase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           248
                           64.51
                           75.40
                           14
                           843.0
     

     
     
141698
                           emb|CAE33326.1|
                           (BX640445) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           254
                           61.81
                           73.62
                           11
                           795.0
     

     
     
141699
                           emb|CAE41632.1|
                           (BX640415) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           254
                           61.81
                           73.62
                           11
                           795.0
     

     






      

          
GC ORFID: 46142How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2156Glimmer Score: 

          
Start: 1687061Stop: 1686324

          
Length: 738


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2156 translation of PA2156Homolog Bit Score 504.0

          
Other Homologs:  t_PA2156 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCTGCCGCGCCTGCAGGTGCTGACGGTGAACACCCACAAGGGTTTCAACCCGTTCAATCGGCGCTTC 
ATCCTGCCGGAGTTGCGCGAAGCGGTGCGCAGCGTCGGTGCCGACCTGGTGTTCCTCCAGGAGGTCCTCGGC 
TCCCATAGCCTGCACGCCGCGCGCCTGCCGTCCTGGCCGCCGGCGCCGCAATACGAGTATCTGGCCGACAGC 
ATGTGGCCGCAGTTCGCCTACGGGCGCAACGCGGTGTATCCCGAAGGCCACCATGGCAATGCCGTGCTCTCC 
AAGCATCCGATCCTCGCCCACCGCAACCTCGACGTCTCGGTGGCGGGCAACGAGGAACGCGGCCTGTTGCAT 
GCGGTGATCGACATCGGCCGTCCGCTGCACGCGGTCTGCGTGCACCTGGGATTGCGCGAGGCGCAGCGCCAG 
CGCCAGTTGCAACTGCTCTGCGAGCTGGTGGCGGGCCTGCCGGAGCGCGAGCCGGTGGTGGTCGCCGGCGAC 
TTCAACGACTGGCGCCAGCGCGCCGACCAACTGCTCGCCGGTTGCGGCCTGCGCGAAGTCTTCGTCGGCGCC 
CAGGGCCGGCCGGCGCGCAGCTTCCCGGCGCGCTGGCCGGTGCTGCCGCTGGACCGCATCTACCTGCGCAAT 
GCACGCGGGCGCCAGCCGCGCATCCTCTCGCGGCGGCCCTGGTCGCACCTGTCCGACCACCTGCCGCTGGCG 
GTGGAGGTGGAGCCATGA