ViewGene

Locus Name:
GeneID:
Location:

GeneID:314
TrivialName: PA14_62710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62710
PAO1 Ortholog Locus:PA4740
Sequence Length:2106
Protein Length:701
Start: 5597408
Stop: 5595303
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08126.1|AE004888_1 (AE004888) polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 701/701 (100%), Positives = 701/701 (100%)
Sequence:
GTGAACCCGGTAACCAAGCAATTCCAGTTCGGTCAGTCGACCGTCACTCTCGAGACCGGCCGTATCGCTCGC
CAGGCCACCGGCGCCGTACTGGTCACCATGGACGACGTCAGCGTGCTGGTCACCGTGGTCGGCGCCAAGTCG
CCGGCCGAAGGCCGCGACTTCTTCCCGCTGTCCGTGCACTACCAGGAAAAGACCTACGCCGCAGGCCGTATC
CCCGGCGGTTTCTTCAAGCGTGAAGGACGTCCTTCCGAGAAGGAAACCCTGACCTCGCGCCTGATCGACCGT
CCGATCCGTCCGCTGTTCCCCGAAGGTTTCATGAATGAAGTGCAGGTCGTCTGCACCGTCGTTTCCACCAAC
AAGAAGTCCGATCCGGACATCGCCGCGATGATCGGTACCTCCGCCGCCCTGGCGATCTCCGGCATTCCGTTC
GCCGGCCCGATCGGCGCCGCCCGCGTCGGTTTCCATCCGGAAATCGGCTACATCCTCAACCCCACCTACGAG
CAACTGCAGAGTTCCAGCCTCGACATGGTCGTGGCCGGTACCGAAGACGCCGTGCTGATGGTGGAGTCCGAG
GCCGACGAACTGACCGAAGACCAGATGCTCGGTGCCGTGCTGTTCGCCCACGACGAGTTCCAGGCGGTGATC
CGTGCCGTCAAGGAGCTGGCCGCCGAAGCTGGCAAGCCGGCCTGGGACTGGAAAGCCCCGGCGGAAAACACC
GTGCTGGTCAACGCCATCAAGGCAGAGCTGGGCGAAGCGATCTCCCAGGCCTATACCATCACCATCAAGCAG
GACCGCTACAACCGTCTGGGCGAGCTGCGCGACCAGGCCGTGGCCCTGTTCGCCGGCGAGGAAGAGGGCAAG
TTCCCGGCTTCCGAGGTCAAGGACGTATTCGGCCTGCTGGAATACCGCACCGTTCGCGAGAACATCGTCAAC
GGCAAGCCGCGTATCGACGGTCGTGACACCCGTACCGTGCGTCCGCTGCGCATCGAAGTCGGCGTGCTCGGC
AAGACCCACGGTTCCGCGCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCGTCGCGACCCTCGGCACCGCG
CGCGATGCCCAGTTGCTGGATACCCTGGAAGGCGAGCGCAAGGACGCCTTCATGCTGCACTACAACTTCCCG
CCCTTCTCGGTAGGCGAGTGCGGCCGCATGGGCAGCCCGGGTCGTCGTGAAATCGGCCATGGCCGTCTGGCC
CGTCGTGGCGTCGCTGCCATGCTGCCGACCCAGGACGAGTTCCCCTACACCATTCGCGTGGTTTCCGAGATC
ACCGAGTCCAACGGTTCCAGCTCGATGGCCTCCGTGTGCGGCGCCTCCCTGGCGCTGATGGATGCCGGTGTG
CCGGTCAAGGCGCCGGTCGCCGGTATCGCCATGGGCCTGGTCAAGGAAGGCGAGAAGTTCGCCGTCCTGACC
GACATCCTCGGTGATGAAGACCACCTGGGCGACATGGACTTCAAGGTTGCCGGTACCGACAAGGGCGTCACC
GCCCTGCAGATGGACATCAAGATCAACGGTATCACCGAAGAGATCATGGAGATCGCCCTGGGCCAGGCCCTG
GAAGCTCGCCTGAACATCCTCGGCCAGATGAACCAGGTCATCGCCAAGCCGCGCGCCGAGCTGTCCGAGAAC
GCCCCGACCATGCTGCAGATGAAGATCGACTCGGACAAGATCCGCGACGTCATCGGCAAGGGCGGCGCGACC
ATCCGTGGTATCTGCGAAGAGACCAAAGCCTCGATCGACATCGAGGACGATGGCAGCGTGAAGATCTACGGC
GAAACCAAGGAAGCCGCCGAGGCCGCCAAGCTGCGCGTCCTGGCGATCACCGCGGAAGCCGAGATCGGCAAG
ATCTATGTCGGCAAGGTGGAGCGCATCGTCGACTTCGGGGCCTTCGTCAACATCCTGCCGGGCAAGGACGGC
CTGGTGCACATCTCGCAGATCAGCGACAAGCGCATCGACAAGGTCACCGACGTGCTGCAGGAAGGCCAGGAA
GTGAAGGTCCTGGTGCTCGACGTGGACAACCGTGGCCGCATCAAGCTGTCGATCAAGGACGTGGCTGCCGCC
GAAGCTTCCGGCGTGTAA
Translation:
MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRI
PGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSDPDIAAMIGTSAALAISGIPF
AGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVAGTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVI
RAVKELAAEAGKPAWDWKAPAENTVLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGK
FPASEVKDVFGLLEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQDEFPYTIRVVSEI
TESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTDKGVT
ALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGAT
IRGICEETKASIDIEDDGSVKIYGETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDG
LVHISQISDKRIDKVTDVLQEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGV*
AnnotationID:324GeneID:314
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 06:06:58
Gene Name:pnp
Confidence Code:2
GeneProduct:polyribonucleotide nucleotidyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1185
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:2.7.7.8
Status:ACTIVE
Pathway:
Homology:
>emb|CAA77048.1| (Y18132) polyribonucleotide nucleotidyltransferase [Pseudomonas
           putida]
          Length = 701

 Score = 1188 bits (3073), Expect = 0.0
 Identities = 613/702 (87%), Positives = 648/702 (92%), Gaps = 2/702 (0%)

>gb|AAO57935.1| (AE016872) polyribonucleotide nucleotidyltransferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 701

 Score = 1165 bits (3013), Expect = 0.0
 Identities = 602/702 (85%), Positives = 640/702 (91%), Gaps = 2/702 (0%)

>gb|AAG58300.1|AE005545_2 (AE005545) polynucleotide phosphorylase; cytidylate kinase activity
           [Escherichia coli O157:H7 EDL933]
          Length = 734

 Score =  868 bits (2244), Expect = 0.0
 Identities = 448/693 (64%), Positives = 549/693 (79%), Gaps = 4/693 (0%)
Structural Features:
COG1185, Pnp, Polyribonucleotide nucleotidyltransferase 
(polynucleotide phosphorylase) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 692 residues,  99.6% aligned
Score =  985 bits (2549), Expect = 0.0
Identities = 446/693 (64%), Positives = 540/693 (77%), Gaps = 4/693 (0%)
Genomic Context:
Comment:
ReferenceID:14109
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17773
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37647
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:314_cdd.html
URL:
ReferenceID:37731
Author/Investigator(s): Regnier P, Grunberg-Manago M, Portier C.
Title: Nucleotide sequence of the pnp gene of Escherichia coli encoding polynucleotide phosphorylase. Homology of the primary structure of the protein with the RNA-binding domain of ribosomal protein S1.
PubMed: 2432069
MedLine:
Source:
J Biol Chem. 1987 Jan 5;262(1):63-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2432069
ReferenceID:37732
Author/Investigator(s): Portier C, Regnier P.
Title: Expression of the rpsO and pnp genes: structural analysis of a DNA fragment carrying their control regions.
PubMed: 6382163
MedLine:
Source:
Nucleic Acids Res. 1984 Aug 10;12(15):6091-102.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6382163
Homologs By Global Alignment
Gene ID:314

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
513 PA4740_tr translation of PA4740 701 99.99 99.99 0 3507.0
25784 gb|AAG08126.1|AE004888_1 (AE004888) polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa PAO1] 701 99.85 99.99 0 3504.0
25785 emb|CAA77048.1| (Y18132) polyribonucleotide nucleotidyltransferase [Pseudomonas putida] 702 87.17 92.30 2 3073.0
25786 gb|AAN70281.1|AE016668_7 (AE016791) polyribonucleotide nucleotidyltransferase [Pseudomonas putida KT2440] 702 87.03 92.16 2 3068.0
25787 gb|AAO57935.1| (AE016872) polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] 702 85.61 91.16 2 3013.0
GC ORFID: 43316How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4740Glimmer Score:
Start: 4861088Stop: 4858983
Length: 2106
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4740 translation of PA4740Homolog Bit Score 1355.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5497 (ORF: BLASTX 1167.0), t_PA4740 (ORF: GLIMMER)
GC ORF Sequence
GTGAACCCGGTAACCAAGCAATTCCAGTTCGGTCAGTCGACCGTCACTCTCGAGACCGGCCGTATCGCTCGC
CAGGCCACCGGCGCCGTACTGGTCACCATGGACGACGTCAGCGTGCTGGTCACCGTGGTCGGCGCCAAGTCG
CCGGCCGAAGGCCGCGACTTCTTCCCGCTGTCCGTGCACTACCAGGAAAAGACCTACGCCGCAGGCCGTATC
CCCGGCGGTTTCTTCAAGCGTGAAGGACGTCCTTCCGAGAAGGAAACCCTGACCTCGCGCCTGATCGACCGT
CCGATCCGTCCGCTGTTCCCCGAAGGTTTCATGAATGAAGTGCAGGTCGTCTGCACCGTCGTTTCCACCAAC
AAGAAGTCCGATCCGGACATCGCCGCGATGATCGGTACCTCCGCCGCCCTGGCGATCTCCGGCATTCCGTTC
GCCGGCCCGATCGGCGCCGCCCGCGTCGGTTTCCATCCGGAAATCGGCTACATCCTCAACCCCACCTACGAG
CAACTGCAGAGTTCCAGCCTCGACATGGTCGTGGCCGGTACCGAAGACGCCGTGCTGATGGTGGAGTCCGAG
GCCGACGAACTGACCGAAGACCAGATGCTCGGTGCCGTGCTGTTCGCCCACGACGAGTTCCAGGCGGTGATC
CGTGCCGTCAAGGAGCTGGCCGCCGAAGCTGGCAAGCCGGCCTGGGACTGGAAAGCCCCGGCGGAAAACACC
GTGCTGGTCAACGCCATCAAGGCAGAGCTGGGCGAAGCGATCTCCCAGGCCTATACCATCACCATCAAGCAG
GACCGCTACAACCGTCTGGGCGAGCTGCGCGACCAGGCCGTGGCCCTGTTCGCCGGCGAGGAAGAGGGCAAG
TTCCCGGCTTCCGAGGTCAAGGACGTATTCGGCCTGCTGGAATACCGCACCGTTCGCGAGAACATCGTCAAC
GGCAAGCCGCGTATCGACGGTCGTGACACCCGTACCGTGCGTCCGCTGCGCATCGAAGTCGGCGTGCTCGGC
AAGACCCACGGTTCCGCGCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCGTCGCGACCCTCGGCACCGCG
CGCGATGCCCAGTTGCTGGATACCCTGGAAGGCGAGCGCAAGGACGCCTTCATGCTGCACTACAACTTCCCG
CCCTTCTCGGTAGGCGAGTGCGGCCGCATGGGCAGCCCGGGTCGTCGTGAAATCGGCCATGGCCGTCTGGCC
CGTCGTGGCGTCGCTGCCATGCTGCCGACCCAGGACGAGTTCCCCTACACCATTCGCGTGGTTTCCGAGATC
ACCGAGTCCAACGGTTCCAGCTCGATGGCCTCCGTGTGCGGCGCCTCCCTGGCGCTGATGGATGCCGGTGTG
CCGGTCAAGGCGCCGGTCGCCGGTATCGCCATGGGCCTGGTCAAGGAAGGCGAGAAGTTCGCCGTCCTGACC
GACATCCTCGGTGATGAAGACCACCTGGGCGACATGGACTTCAAGGTTGCCGGTACCGACAAGGGCGTCACC
GCCCTGCAGATGGACATCAAGATCAACGGTATCACCGAAGAGATCATGGAGATCGCCCTGGGCCAGGCCCTG
GAAGCTCGCCTGAACATCCTCGGCCAGATGAACCAGGTCATCGCCAAGCCGCGCGCCGAGCTGTCCGAGAAC
GCCCCGACCATGCTGCAGATGAAGATCGACTCGGACAAGATCCGCGACGTCATCGGCAAGGGCGGCGCGACC
ATCCGTGGTATCTGCGAAGAGACCAAAGCCTCGATCGACATCGAGGACGATGGCAGCGTGAAGATCTACGGC
GAAACCAAGGAAGCCGCCGAGGCCGCCAAGCTGCGCGTCCTGGCGATCACCGCGGAAGCCGAGATCGGCAAG
ATCTATGTCGGCAAGGTGGAGCGCATCGTCGACTTCGGGGCCTTCGTCAACATCCTGCCGGGCAAGGACGGC
CTGGTGCACATCTCGCAGATCAGCGACAAGCGCATCGACAAGGTCACCGACGTGCTGCAGGAAGGCCAGGAA
GTGAAGGTCCTGGTGCTCGACGTGGACAACCGTGGCCGCATCAAGCTGTCGATCAAGGACGTGGCTGCCGCC
GAAGCTTCCGGCGTGTAA