ViewGene

Locus Name:
GeneID:
Location:

GeneID:3139
TrivialName: PA14_43910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43910
PAO1 Ortholog Locus:PA1591
Sequence Length:765
Protein Length:254
Start: 3909504
Stop: 3908740
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04980.1|AE004587_4 (AE004587) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 253/254 (99%), Positives = 253/254 (99%)
Sequence:
ATGACCGCCGAACTCGGCATTTTCAACGGGCACCTGCCGCAACACCTGCTGGCGGCGCTCTGGTTCCTGTTC
TGCTGGGTGGGCTACACCCGCTACGCCACCTGGAAGGGCCGCGACACCGCTTGCCTGGCCAGCGTCCTGCAC
CTCTACCGGGAGGACTGGATGCGCCGGCTGCTGCTGCGTGACAACCGTATCGCCGACGCCAGCGTGATCGGC
AACCTGGAGCGCAACGCGTCGTTCTTCGCTTCCAGCACGCTGATCATCCTCGCCGGCATCCTCACCCTGCTG
GGCTCCACCGACCGCGCCGTCTCGGTACTGGCCGACCTGCCGTTCGTGGAGGAGGCCAGCCGGGGACTGTCG
GAACTGAAGCTGCTGTGCCTGGCAGTGGTCTTCGTCTATGCCTTCTTCACCTTCAGCTGGTGCATGCGCCAG
TACAACTTCGCGGCGATCCTGGTCGGCTCGGCACCGATGATCGGCGAGCGCAACGTCGGCGAGCTGGAGCGC
AAATCCTTTGCCGAGCGTGCCGCCCGGGTCATCTCGCTGGCGGCCAACCAGTTCAACTTCGGCTTGCGCTCG
TACTATTTCGGCCTGGCCATGCTCGCCTGGTTCATCAACTCCTGGTTCTTCATGCTGGTGACGGCCGGCGTG
GTGCTGGTCCTGTATCGCCGCGAGTTCCATTCGGACGTGCTGGAGGTGATGGTCTACACCGAGACCGCAATC
GCCGAAAGCCCGCGGGAAGGCGAGGGCGAGGTGCCCAGAGGCTGA
Translation:
MTAELGIFNGHLPQHLLAALWFLFCWVGYTRYATWKGRDTACLASVLHLYREDWMRRLLLRDNRIADASVIG
NLERNASFFASSTLIILAGILTLLGSTDRAVSVLADLPFVEEASRGLSELKLLCLAVVFVYAFFTFSWCMRQ
YNFAAILVGSAPMIGERNVGELERKSFAERAARVISLAANQFNFGLRSYYFGLAMLAWFINSWFFMLVTAGV
VLVLYRREFHSDVLEVMVYTETAIAESPREGEGEVPRG*
AnnotationID:3147GeneID:3139
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 14:02:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1591
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC45986.1| (AL591787) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
           meliloti]
          Length = 229

 Score =  148 bits (374), Expect = 3e-35
 Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:6281
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23423
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37277
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3139_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3139

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5041 PA1591_tr translation of PA1591 254 99.60 99.60 0 1298.0
141691 gb|AAG04980.1|AE004587_4 (AE004587) hypothetical protein PA1591 [Pseudomonas aeruginosa PAO1] 254 99.60 99.60 0 1298.0
141692 gb|AAN69764.1|AE016612_10 (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440] 255 72.94 84.31 7 978.0
141693 gb|AAN56757.1|AE015811_5 (AE015811) conserved hypothetical protein [Shewanella oneidensis MR-1] 260 38.46 57.30 22 491.0
GC ORFID: 46141How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1591Glimmer Score:
Start: 1044405Stop: 1045169
Length: 765
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1591 translation of PA1591Homolog Bit Score 504.0
Other Homologs: t_PA1591 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCCGAACTCGGCATTTTCAACGGGCACCTGCCGCAACACCTGCTGGCGGCGCTCTGGTTCCTGTTC
TGCTGGGTGGGCTACACCCGCTACGCCACCTGGAAGGGCCGCGACACCGCTTGCCTGGCCAGCGTCCTGCAC
CTCTACCGGGAGGACTGGATGCGCCGGCTGCTGCTGCGTGACAACCGTATCGCCGACGCCAGCGTGATCGGC
AACCTGGAGCGCAACGCGTCGTTCTTCGCTTCCAGCACGCTGATCATCCTCGCCGGCATCCTCACCCTGCTG
GGCTCCACCGACCGCGCCGTCTCGGTACTGGCCGACCTGCCGTTCGTGGAGGAGGCCAGCCGGGGACTGTCG
GAACTGAAGCTGCTGTGCCTGGCAGTGGTCTTCGTCTATGCCTTCTTCACCTTCAGCTGGTGCATGCGCCAG
TACAACTTCGCGGCGATCCTGGTCGGCTCGGCACCGATGATCGGCGAGCGCAACGTCGGCGAGCTGGAGCGC
AAATCCTTTGCCGAGCGTGCCGCCCGGGTCATCTCGCTGGCGGCCAACCAGTTCAACTTCGGCTTGCGCTCG
TACTATTTCGGCCTGGCCATGCTCGCCTGGTTCATCAACTCCTGGTTCTTCATGCTGGTGACGGCCGGCGTG
GTGCTGGTCCTGTATCGCCGCGAGTTCCATTCGGACGTGCTGGAGGTGATGGTCTACACCGAGACCGCAATC
GCCGAAAGCCCGCGGGAAGGCGAGGGCGAGGTGCCCAGAGGCTGA