ViewGene
Locus Name:
GeneID:
Location:

GeneID:3138
TrivialName: PA14_04230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04230
PAO1 Ortholog Locus:PA0324
Sequence Length:789
Protein Length:262
Start: 379327
Stop: 378539
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03713.1|AE004470_7 (AE004470) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 260/262 (99%), Positives = 261/262 (99%)
Sequence:
ATGAACGGCCGCAATCCACTCTGGACCTTCAGCGGCGTGCGCCAGGCCGCCTGGCTGTTCTTCGCCTTCCTC
TACATCCCGATCCTGGTGCTGGTAGCGCTCAGCTTCAACAGCGGCCAGTCGGCGACGCTCTGGGAGAGCTTC
AGCCTGAAATGGTACGCGGTGGTGGCCAACGATCCGGAAATCCTCCGCGCGGCGAAGAACTCGCTGATCGTC
GCCACCCTCGCCACCCTGGCCTCGACCGTCCTGGCCACCCTCGCCGCGCTGGGCATGCGCGGTCGCGCCTTC
CGCGGACAGACCCTGATGAACGGCGTGCTCGGCCTGCCGTTGCTGGTGCCGGAGATCGTCACCGCGGTGGCG
ACCCTGATGTTCTTCTCCTTCATCGGCCTGAAGCTGTCGTTGTTCACCATCCTCATCGCCCACATCGTGTTC
TGCATCCCCTTCGCCTACCTGCCGATCCGCGCCCGCCTGGAGGGCCTGGACCCGCGCCTGGCAGAGGCCGCC
GCCGACCTCTACGCCTCGCCGTGGAAGGCCTTCTGGAAAATCACCCTGCCGCTGCTGATGCCCGGCGTGCTG
TCCGGGGCGATGCTCGCGTTCATCATCTCGATGGACGATTTCGTCATCACCTATTTCGTCGCCGGCGCCGGC
GCAACCACCCTGCCGGTGTACATCTTCAGCTCCATCCGCATGGGCATATCCCCGAAGATCAATGCGATTTCA
TCGATCATCCTCATGATTTCCATCGCCTTCGTCGCCCTGTCGTACTACCTCGGCCAACGCCGCCGCTGA
Translation:
MNGRNPLWTFSGVRQAAWLFFAFLYIPILVLVALSFNSGQSATLWESFSLKWYAVVANDPEILRAAKNSLIV
ATLATLASTVLATLAALGMRGRAFRGQTLMNGVLGLPLLVPEIVTAVATLMFFSFIGLKLSLFTILIAHIVF
CIPFAYLPIRARLEGLDPRLAEAAADLYASPWKAFWKITLPLLMPGVLSGAMLAFIISMDDFVITYFVAGAG
ATTLPVYIFSSIRMGISPKINAISSIILMISIAFVALSYYLGQRRR*
AnnotationID:3146GeneID:3138
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:44
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA0324
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative spermidine/putrescine ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:COG1177
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB50904.1| (AP003003) spermidine/putrescine ABC transporter, permease protein
           [Mesorhizobium loti]
          Length = 264

 Score =  225 bits (573), Expect = 2e-58
 Identities = 120/252 (47%), Positives = 173/252 (68%), Gaps = 7/252 (2%)

>gb|AAF10874.1|AE001977_7 (AE001977) spermidine/putrescine ABC transporter, permease protein
           [Deinococcus radiodurans]
          Length = 270

 Score =  219 bits (558), Expect = 1e-56
 Identities = 105/255 (41%), Positives = 171/255 (67%), Gaps = 9/255 (3%)






 
Structural Features:
COG1177, PotC, ABC-type spermidine/putrescine transport system, 
permease component II 
[Amino acid transport and metabolism]
CD-Length = 267 residues,  98.5% aligned
Score =  228 bits (583), Expect = 5e-61
Identities = 126/263 (47%), Positives = 185/263 (70%), Gaps = 1/263 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6279




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23421




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33670




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3138_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3138
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5039
                           PA0324_tr
                           translation of PA0324
                           262
                           99.23
                           99.61
                           0
                           1301.0
     

     
     
141652
                           gb|AAG03713.1|AE004470_7
                           (AE004470) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           262
                           99.23
                           99.61
                           0
                           1301.0
     

     
     
5040
                           PA0204_tr
                           translation of PA0204
                           269
                           52.41
                           69.14
                           7
                           714.0
     

     
     
141653
                           gb|AAG03593.1|AE004458_8
                           (AE004458) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           269
                           52.41
                           69.14
                           7
                           714.0
     

     
     
141655
                           dbj|BAB50904.1|
                           (AP003003) spermidine/putrescine ABC transporter, permease protein [Mesorhizobium loti]
                           273
                           45.78
                           65.20
                           20
                           581.0
     

     






      

          
GC ORFID: 46140How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0324Glimmer Score: 

          
Start: 6180669Stop: 6179881

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0324 translation of PA0324Homolog Bit Score 505.0

          
Other Homologs:  t_PA0204 (ORF: BLASTX 279.0), psyr_15may02_Scaffold13_revised_gene2137 (ORF: BLASTX 184.0), t_PA0324 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGCCGCAATCCACTCTGGACCTTCAGCGGCGTGCGCCAGGCCGCCTGGCTGTTCTTCGCCTTCCTC 
TACATCCCGATCCTGGTGCTGGTAGCGCTCAGCTTCAACAGCGGCCAGTCGGCGACGCTCTGGGAGAGCTTC 
AGCCTGAAATGGTACGCGGTGGTGGCCAACGATCCGGAAATCCTCCGCGCGGCGAAGAACTCGCTGATCGTC 
GCCACCCTCGCCACCCTGGCCTCGACCGTCCTGGCCACCCTCGCCGCGCTGGGCATGCGCGGTCGCGCCTTC 
CGCGGACAGACCCTGATGAACGGCGTGCTCGGCCTGCCGTTGCTGGTGCCGGAGATCGTCACCGCGGTGGCG 
ACCCTGATGTTCTTCTCCTTCATCGGCCTGAAGCTGTCGTTGTTCACCATCCTCATCGCCCACATCGTGTTC 
TGCATCCCCTTCGCCTACCTGCCGATCCGCGCCCGCCTGGAGGGCCTGGACCCGCGCCTGGCAGAGGCCGCC 
GCCGACCTCTACGCCTCGCCGTGGAAGGCCTTCTGGAAAATCACCCTGCCGCTGCTGATGCCCGGCGTGCTG 
TCCGGGGCGATGCTCGCGTTCATCATCTCGATGGACGATTTCGTCATCACCTATTTCGTCGCCGGCGCCGGC 
GCAACCACCCTGCCGGTGTACATCTTCAGCTCCATCCGCATGGGCATATCCCCGAAGATCAATGCGATTTCA 
TCGATCATCCTCATGATTTCCATCGCCTTCGTCGCCCTGTCGTACTACCTCGGCCAACGCCGCCGCTGA