ViewGene
Locus Name:
GeneID:
Location:

GeneID:3137
TrivialName: PA14_66480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66480
PAO1 Ortholog Locus:PA5028
Sequence Length:768
Protein Length:255
Start: 5930585
Stop: 5929818
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08413.1|AE004916_2 (AE004916) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 254/255 (99%), Positives = 255/255 (100%)
Sequence:
ATGCGGCGCGTGGTGTTCAATCAGAAAGGCGGGGTAGGCAAGTCCAGCATCGCCTGCAACCTGGCGGCGGTC
AGCGCGGCGGAGGGCTATCGCACCCTGCTGGTGGACCTGGACGCCCAGGCCAACTCCACGCACTACCTGACC
GGACTGACCGGCGAGGACCTGCCGGTGGGGATCGCCGACTTCTTCAAGCAGACCTTGTCTTCCGGACCCTTC
AGCAAGAAGGGCAGGGTCGACATCTACGAGACGCCGTTCGACAACCTGCACATCGTCACCTCCAGCCCCGAA
CTGGCCGACCTGCAGCCGAAGCTGGAGTCGAAGCACAAGATCAACAAGCTGCGCAAATTGCTGGACGAACTG
GACGAAGACTACGACCGGATCTACCTGGATACCCCGCCGGCACTGAATTTCTACACGGTATCTGCGCTGATC
GCTGCCGATCGCTGCCTGATTCCCTTCGATTGCGACAGCTTCTCCCGCCAGGCGCTGTATGGCCTTCTCCAG
GAGATCGAGGAACTGCGCGACGACCACAACGAAGACCTGCAGGTCGAGGGCATCGTGGTCAACCAGTTCCAG
CCGCGCGCCAGCCTGCCGCAGCAACTGCTCGACGAGCTGGTGGCGGAGGAACTGCCGGTGCTGCCGGTGTAC
CTGATGAGCTCGGTGAAGATGCGCGAGTCGCACCAGGCTTGCACCCCGCTGATCTTCCTCGAACCGCGGCAC
AAGTTGACCCAGCAGTTCGTCGAGTTGCACGGGCTGCTCGAAAGCTGA
Translation:
MRRVVFNQKGGVGKSSIACNLAAVSAAEGYRTLLVDLDAQANSTHYLTGLTGEDLPVGIADFFKQTLSSGPF
SKKGRVDIYETPFDNLHIVTSSPELADLQPKLESKHKINKLRKLLDELDEDYDRIYLDTPPALNFYTVSALI
AADRCLIPFDCDSFSRQALYGLLQEIEELRDDHNEDLQVEGIVVNQFQPRASLPQQLLDELVAEELPVLPVY
LMSSVKMRESHQACTPLIFLEPRHKLTQQFVELHGLLES*
AnnotationID:3145GeneID:3137
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 14:02:13
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase nvolved in chromosome partitioning
Cell Localization:()
Synonyms:PA5028
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1192,COG0455
Secondary Functional Category(ies):cell division and chromosome partitioning
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70635.1|AE016707_5 (AE016793) ParA family protein [Pseudomonas putida KT2440]
          Length = 257

 Score =  445 bits (1144), Expect = e-124
 Identities = 222/254 (87%), Positives = 238/254 (93%)

>gb|AAO58517.1| (AE016874) ParA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 259

 Score =  438 bits (1126), Expect = e-122
 Identities = 215/255 (84%), Positives = 239/255 (93%)








 
Structural Features:
COG1192, Soj, ATPases involved in chromosome partitioning 
[Cell division and chromosome partitioning]
CD-Length = 259 residues,  94.2% aligned
Score =  151 bits (381), Expect = 1e-37
Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 11/252 (4%)

COG0455, COG0455, ATPases involved in chromosome partitioning 
[Cell division and chromosome partitioning]
CD-Length = 262 residues,  87.4% aligned
Score = 92.3 bits (229), Expect = 5e-20
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 21/248 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6277




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23419




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35079




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3137_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3137
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5038
                           PA5028_tr
                           translation of PA5028
                           255
                           99.60
                           99.99
                           0
                           1301.0
     

     
     
141647
                           gb|AAG08413.1|AE004916_2
                           (AE004916) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           255
                           99.60
                           99.99
                           0
                           1301.0
     

     
     
141648
                           gb|AAN70635.1|AE016707_5
                           (AE016793) ParA family protein [Pseudomonas putida KT2440]
                           257
                           86.38
                           92.60
                           2
                           1144.0
     

     
     
141649
                           gb|AAO58517.1|
                           (AE016874) ParA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           259
                           83.01
                           92.27
                           4
                           1126.0
     

     
     
141650
                           gb|AAN68024.1|AE016435_1
                           (AE016783) ParA family protein [Pseudomonas putida KT2440]
                           265
                           67.54
                           79.24
                           12
                           893.0
     

     






      

          
GC ORFID: 46139How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5028Glimmer Score: 

          
Start: 5194268Stop: 5193501

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5028 translation of PA5028Homolog Bit Score 505.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3311 (ORF: BLASTX 433.0), t_PA5028 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCGCGTGGTGTTCAATCAGAAAGGCGGGGTAGGCAAGTCCAGCATCGCCTGCAACCTGGCGGCGGTC 
AGCGCGGCGGAGGGCTATCGCACCCTGCTGGTGGACCTGGACGCCCAGGCCAACTCCACGCACTACCTGACC 
GGACTGACCGGCGAGGACCTGCCGGTGGGGATCGCCGACTTCTTCAAGCAGACCTTGTCTTCCGGACCCTTC 
AGCAAGAAGGGCAGGGTCGACATCTACGAGACGCCGTTCGACAACCTGCACATCGTCACCTCCAGCCCCGAA 
CTGGCCGACCTGCAGCCGAAGCTGGAGTCGAAGCACAAGATCAACAAGCTGCGCAAATTGCTGGACGAACTG 
GACGAAGACTACGACCGGATCTACCTGGATACCCCGCCGGCACTGAATTTCTACACGGTATCTGCGCTGATC 
GCTGCCGATCGCTGCCTGATTCCCTTCGATTGCGACAGCTTCTCCCGCCAGGCGCTGTATGGCCTTCTCCAG 
GAGATCGAGGAACTGCGCGACGACCACAACGAAGACCTGCAGGTCGAGGGCATCGTGGTCAACCAGTTCCAG 
CCGCGCGCCAGCCTGCCGCAGCAACTGCTCGACGAGCTGGTGGCGGAGGAACTGCCGGTGCTGCCGGTGTAC 
CTGATGAGCTCGGTGAAGATGCGCGAGTCGCACCAGGCTTGCACCCCGCTGATCTTCCTCGAACCGCGGCAC 
AAGTTGACCCAGCAGTTCGTCGAGTTGCACGGGCTGCTCGAAAGCTGA