ViewGene

Locus Name:
GeneID:
Location:

GeneID:3136
TrivialName: PA14_66210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66210
PAO1 Ortholog Locus:PA5008
Sequence Length:735
Protein Length:244
Start: 5899262
Stop: 5898528
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC33170.1| (U63816) unknown protein [Pseudomonas aeruginosa]
Identities = 243/244 (99%), Positives = 243/244 (99%)
Sequence:
ATGGCGGGGTGGACCCTCGAACCCGATTACCGTCACCTGGCCGCCGATTTCGGTAGCCTCGATAGCGTGTTC
GCCCTGGAGGGCGAACGGCTGACCCGCGACCCGTTGTCCGAAGTCATCCGCATCGAGCGCGACGGCGTGCGT
TACTACGTCAAGCGCTACCGCAGCGCCGGCAAGGGCCTGCGCCGCTACCTGGCGCGACCGCGGATCAAGGCT
GAGTGGCAGAACCTCAAGCGCTTCGAGAAGTGGGGCATTCCCACCGCCGAAGTGGTCGCCTGGGGGCTGGAG
CGCAAGGCCGGCGCCTTCCAGCGCGGCGCCATGATCACCCGCGAGCTGCCGGGCACCGAGGACTTGTCGGTG
CTCGCCTGCAACCGGGATCCGCGCCTGAAGGACCCGCGCTGGGTGGACGGCGTCAGCCGGCAGATCGCCAAG
GCTACGCGCCTGATGCACGACCAGCATTTCACCCACAACGACCTGAAGTGGCGCAACCTGCTGGTGGACGGC
CAGCCGCTGGTGTATTTCATCGACTGCCCGAACGGCGCGTTCTGGTGGAGCTTCATGCTGCGCTACCGGATC
ACCAAGGACCTGGCCTGCCTGGACAAGGTGGCCAAGTACCACCTGTCGCGCACCCAGCGCCTGCGCTTCTAC
CTGCAATATCGCCGTCGCCGGCACCTGAACGAATCCGACAAGAAGCGTATTCGCCAGGTGGTGGCTTTCTTC
GAGGGGCGCGAATGA
Translation:
MAGWTLEPDYRHLAADFGSLDSVFALEGERLTRDPLSEVIRIERDGVRYYVKRYRSAGKGLRRYLARPRIKA
EWQNLKRFEKWGIPTAEVVAWGLERKAGAFQRGAMITRELPGTEDLSVLACNRDPRLKDPRWVDGVSRQIAK
ATRLMHDQHFTHNDLKWRNLLVDGQPLVYFIDCPNGAFWWSFMLRYRITKDLACLDKVAKYHLSRTQRLRFY
LQYRRRRHLNESDKKRIRQVVAFFEGRE*
AnnotationID:3144GeneID:3136
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:33
Gene Name:
Confidence Code:3
GeneProduct:putative lipopolysaccharide core biosynthesis protein
Cell Localization:()
Synonyms:waaX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:putative heptose kinase WapP
Functional Category Confidence Code:5
COGs:pfam06293
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58427.1| (AE016874) lipopolysaccharide core biosynthesis protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 244

 Score =  402 bits (1034), Expect = e-112
 Identities = 186/244 (76%), Positives = 212/244 (86%)

>gb|AAN65976.1|AE016226_5 (AE016775) heptose kinase WapP, putative [Pseudomonas putida
           KT2440]
          Length = 244

 Score =  377 bits (968), Expect = e-104
 Identities = 183/244 (75%), Positives = 200/244 (81%)

Structural Features:
pfam06293, Kdo, Lipopolysaccharide kinase (Kdo/WaaP) family. 
CD-Length = 206 residues,  78.6% aligned
Score = 58.0 bits (140), Expect = 9e-10
Identities = 40/170 (23%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Genomic Context:
Comment:
other possible gene name: wapP
ReferenceID:6275
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23417
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35056
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3136_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3136

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5037 PA5008_tr translation of PA5008 244 99.59 99.59 0 1300.0
141642 gb|AAC33170.1| (U63816) unknown protein [Pseudomonas aeruginosa] 244 99.59 99.59 0 1301.0
141643 gb|AAG08393.1|AE004913_8 (AE004913) hypothetical protein PA5008 [Pseudomonas aeruginosa PAO1] 244 99.59 99.59 0 1300.0
141644 gb|AAD16157.1| (AF097217) putative heptose kinase WapP [Pseudomonas aeruginosa] 244 99.59 99.59 0 1300.0
141645 gb|AAO58427.1| (AE016874) lipopolysaccharide core biosynthesis protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 244 76.22 86.88 0 1034.0
GC ORFID: 46138How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5008Glimmer Score:
Start: 5162945Stop: 5162211
Length: 735
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5008 translation of PA5008Homolog Bit Score 505.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3382 (ORF: BLASTX 399.0), t_PA5008 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGGGGTGGACCCTCGAACCCGATTACCGTCACCTGGCCGCCGATTTCGGTAGCCTCGATAGCGTGTTC
GCCCTGGAGGGCGAACGGCTGACCCGCGACCCGTTGTCCGAAGTCATCCGCATCGAGCGCGACGGCGTGCGT
TACTACGTCAAGCGCTACCGCAGCGCCGGCAAGGGCCTGCGCCGCTACCTGGCGCGACCGCGGATCAAGGCT
GAGTGGCAGAACCTCAAGCGCTTCGAGAAGTGGGGCATTCCCACCGCCGAAGTGGTCGCCTGGGGGCTGGAG
CGCAAGGCCGGCGCCTTCCAGCGCGGCGCCATGATCACCCGCGAGCTGCCGGGCACCGAGGACTTGTCGGTG
CTCGCCTGCAACCGGGATCCGCGCCTGAAGGACCCGCGCTGGGTGGACGGCGTCAGCCGGCAGATCGCCAAG
GCTACGCGCCTGATGCACGACCAGCATTTCACCCACAACGACCTGAAGTGGCGCAACCTGCTGGTGGACGGC
CAGCCGCTGGTGTATTTCATCGACTGCCCGAACGGCGCGTTCTGGTGGAGCTTCATGCTGCGCTACCGGATC
ACCAAGGACCTGGCCTGCCTGGACAAGGTGGCCAAGTACCACCTGTCGCGCACCCAGCGCCTGCGCTTCTAC
CTGCAATATCGCCGTCGCCGGCACCTGAACGAATCCGACAAGAAGCGTATTCGCCAGGTGGTGGCTTTCTTC
GAGGGGCGCGAATGA