ViewGene
Locus Name:
GeneID:
Location:

GeneID:3135
TrivialName: PA14_63890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63890
PAO1 Ortholog Locus:PA4832
Sequence Length:798
Protein Length:265
Start: 5694508
Stop: 5693711
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08217.1|AE004896_7 (AE004896) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 264/265 (99%), Positives = 265/265 (100%)
Sequence:
ATGAACGAACAGATTGGCAATGGCGTCGCCCTGATCACCGGCGCCTCTTCCGGAATCGGCGCGACCTACGCC
GAGCACTTGGCCCGCCGTGGCCACGACCTGTTGCTGGTGGCGCGCGACCGGCAACGCCTGGAAGCCCTGGCG
GATCGACTTCGCCAAGCCCACGGGGTCAGGGTGGAGATCCTGCGCGCCGACCTGTCCGAGCGCGACGATAGG
TTGCGGGTCGAGCGACGGTTGCGCGATGACGCCTCGATCGCGTTGCTGGTGAACAACGCCGGCGTGGCGATG
AACGGTCCGCTGGCCGATGCCGACATGGACCGGGCGGAGCGGATGATCGCCCTCAACGTAGTGGCCCTGACC
CGCCTGGCTGCCGGTGCGGCGGAGGGGTTCCGCCGGCGTGGCGGCGGCGCCATCGTCAACCTCGGTTCGGTG
GTGGCGCTGGCGCCGGAGTTGTTCAATGCCGTCTATAGCGCGACCAAGGCCTACGTGCTGAGCCTGAGCCAG
TCGCTGCAGCACGAGCTGGCCGGCAGCGGCGTTTACGTCCAGGCGGTGCTGCCCGGCGTCACCCGTACCGAG
ATCTGGGAGCGCAGCGGCACCGGAATCGCCGGGATTCCCGCGGAGATGGTGATGGAGGTCGAGGACCTGGTG
GAGGCGGCGCTGGTCGGTTTCGATCGGCGTGAAGCGGTGACCATCCCGTCGTTGCCGGATGCGGCCGATTGG
CAGGCGCTGATGACGGCGCGGGCCAGGCTCGCGCCCAATCTGTCGCGGCAGCGGCCGGCCGAGCGCTACCTC
GGCTGA
Translation:
MNEQIGNGVALITGASSGIGATYAEHLARRGHDLLLVARDRQRLEALADRLRQAHGVRVEILRADLSERDDR
LRVERRLRDDASIALLVNNAGVAMNGPLADADMDRAERMIALNVVALTRLAAGAAEGFRRRGGGAIVNLGSV
VALAPELFNAVYSATKAYVLSLSQSLQHELAGSGVYVQAVLPGVTRTEIWERSGTGIAGIPAEMVMEVEDLV
EAALVGFDRREAVTIPSLPDAADWQALMTARARLAPNLSRQRPAERYLG*
AnnotationID:3143GeneID:3135
AnnotatorUID: diggins
Modification Date/Time: 2005-07-03 09:09:27
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA4832
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative putative oxidoreductase protein
Functional Category Confidence Code:5
COGs:COG0300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC48607.1| (AL603642) putative oxidoreductase protein [Sinorhizobium meliloti]
          Length = 267

 Score =  287 bits (734), Expect = 5e-77
 Identities = 148/260 (56%), Positives = 185/260 (71%)

>gb|AAL46131.1| (AE008965) short-chain dehydrogenase [Agrobacterium tumefaciens
           str. C58 (U. Washington)]
          Length = 262

 Score =  278 bits (712), Expect = 2e-74
 Identities = 150/253 (59%), Positives = 173/253 (68%), Gaps = 2/253 (0%)

>gb|AAO55383.1| (AE016862) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 262

 Score =  266 bits (679), Expect = 1e-70
 Identities = 145/253 (57%), Positives = 179/253 (70%), Gaps = 2/253 (0%)







 
Structural Features:
COG0300, DltE, Short-chain dehydrogenases of various substrate specificities
CD-Length = 265 residues,  99.6% aligned
Score =  265 bits (680), Expect = 3e-72
Identities = 114/264 (43%), Positives = 157/264 (59%), Gaps = 2/264 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6273




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23415




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35217




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3135_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3135
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5036
                           PA4832_tr
                           translation of PA4832
                           265
                           99.62
                           99.99
                           0
                           1301.0
     

     
     
141622
                           gb|AAG08217.1|AE004896_7
                           (AE004896) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           265
                           99.62
                           99.99
                           0
                           1301.0
     

     
     
141624
                           gb|AAL46131.1|
                           (AE008965) short-chain dehydrogenase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           267
                           56.92
                           65.54
                           7
                           709.0
     

     
     
141623
                           emb|CAC48607.1|
                           (AL603642) putative oxidoreductase protein [Sinorhizobium meliloti]
                           268
                           55.22
                           69.02
                           4
                           729.0
     

     
     
141627
                           gb|AAN68597.1|AE016490_14
                           (AE016785) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas putida KT2440]
                           269
                           54.64
                           65.05
                           9
                           668.0
     

     






      

          
GC ORFID: 46137How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4832Glimmer Score: 

          
Start: 4958188Stop: 4957391

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4832 translation of PA4832Homolog Bit Score 505.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7602 (ORF: BLASTX 266.0), t_PA4832 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGAACAGATTGGCAATGGCGTCGCCCTGATCACCGGCGCCTCTTCCGGAATCGGCGCGACCTACGCC 
GAGCACTTGGCCCGCCGTGGCCACGACCTGTTGCTGGTGGCGCGCGACCGGCAACGCCTGGAAGCCCTGGCG 
GATCGACTTCGCCAAGCCCACGGGGTCAGGGTGGAGATCCTGCGCGCCGACCTGTCCGAGCGCGACGATAGG 
TTGCGGGTCGAGCGACGGTTGCGCGATGACGCCTCGATCGCGTTGCTGGTGAACAACGCCGGCGTGGCGATG 
AACGGTCCGCTGGCCGATGCCGACATGGACCGGGCGGAGCGGATGATCGCCCTCAACGTAGTGGCCCTGACC 
CGCCTGGCTGCCGGTGCGGCGGAGGGGTTCCGCCGGCGTGGCGGCGGCGCCATCGTCAACCTCGGTTCGGTG 
GTGGCGCTGGCGCCGGAGTTGTTCAATGCCGTCTATAGCGCGACCAAGGCCTACGTGCTGAGCCTGAGCCAG 
TCGCTGCAGCACGAGCTGGCCGGCAGCGGCGTTTACGTCCAGGCGGTGCTGCCCGGCGTCACCCGTACCGAG 
ATCTGGGAGCGCAGCGGCACCGGAATCGCCGGGATTCCCGCGGAGATGGTGATGGAGGTCGAGGACCTGGTG 
GAGGCGGCGCTGGTCGGTTTCGATCGGCGTGAAGCGGTGACCATCCCGTCGTTGCCGGATGCGGCCGATTGG 
CAGGCGCTGATGACGGCGCGGGCCAGGCTCGCGCCCAATCTGTCGCGGCAGCGGCCGGCCGAGCGCTACCTC 
GGCTGA