ViewGene
Locus Name:
GeneID:
Location:

GeneID:3134
TrivialName: PA14_33270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33270
PAO1 Ortholog Locus:PA2425
Sequence Length:765
Protein Length:254
Start: 2911261
Stop: 2912025
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05813.1|AE004670_1 (AE004670) probable thioesterase [Pseudomonas aeruginosa PAO1]
Identities = 252/254 (99%), Positives = 252/254 (99%)
Sequence:
GTGAGCCCGGCCGTTTCCCTGCAATTGTTCTGCCTGCCTTATTCGGGGGCCAGCGCCACGCTGTTCCGCCGC
TGGCAGCCCAGCCTGCCGGGCTGGATCCGCTTGTTGCCCCTGGAATTGCCGGGGCGCGGCCTCCGCTTCGGC
GAGGCCCTGCATACCGATGCCGCCAGCCTGGTCGCGCAATTGGCCAGCGAGCTGCAAGGCACCCTCGACAGC
GCTTCTCCCTACGCCTTCTTCGGCCACAGCCTGGGCGGGCTGCTGGCCTTCGAACTGGCCCATGCCATGCGT
CGGCGCGGCCTCGAAGGGCCGCTGGCGCTATTCCTCTCCGGTGTATCCCCGCCCGCCGAAAACGATGTCAGC
GGCTACCGGCGCGCCAAGGCCGACGCCGAACTGGTTGCCGCGTTGCGCGACTACCGGGGTACTCCGGAGGCC
GTCCTCAACGATCCGTCGCTGATGCAGATGCTGTTGCCAGTGGTGCGAGCGGACTTTCTCGTCACCGGCAGC
TACCGCTACCAGGCGCATGGGCCGCTGGACGCGGCGCTGCACCTGTTCGGTGGACGCGAGGACAGCCTGCGC
AGCGCCGAGTTGCTCGGCTGGCTGCATGAGGCCGGGGGCGACTTCACCCTCGACCTGCTCGACGGGCAGCAC
TTTTTCATCCGCGAACAGCAGGGGCAGTTGCTGCGCCTGCTGCGTCGCTACGCCGGCCAGCATCTGCTGCGC
TGGCACAAGGACAAGGTCCGGGGAAGCATGCGCGCCGCCAGTTGA
Translation:
MSPAVSLQLFCLPYSGASATLFRRWQPSLPGWIRLLPLELPGRGLRFGEALHTDAASLVAQLASELQGTLDS
ASPYAFFGHSLGGLLAFELAHAMRRRGLEGPLALFLSGVSPPAENDVSGYRRAKADAELVAALRDYRGTPEA
VLNDPSLMQMLLPVVRADFLVTGSYRYQAHGPLDAALHLFGGREDSLRSAELLGWLHEAGGDFTLDLLDGQH
FFIREQQGQLLRLLRRYAGQHLLRWHKDKVRGSMRAAS*
AnnotationID:3142GeneID:3134
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 12:12:51
Gene Name:pvdG
Confidence Code:1
GeneProduct:PvdG
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
pyoverdine synthesis
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14743




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23413




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3134
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5034
                           PA2425_tr
                           translation of PA2425
                           254
                           99.21
                           99.21
                           0
                           1301.0
     

     
     
141615
                           gb|AAG05813.1|AE004670_1
                           (AE004670) probable thioesterase [Pseudomonas aeruginosa PAO1]
                           254
                           98.81
                           99.21
                           0
                           1298.0
     

     
     
141616
                           gb|AAB09716.1|
                           (U12891) ORF4 [Pseudomonas aeruginosa]
                           257
                           93.38
                           94.16
                           7
                           1209.0
     

     
     
141617
                           gb|AAL59667.2|
                           (AF237701) putative thioesterase [Pseudomonas fluorescens]
                           258
                           50.38
                           65.50
                           10
                           679.0
     

     
     
141618
                           gb|AAO55651.1|
                           (AE016863) pyoverdine synthetase, thioesterase component [Pseudomonas syringae pv. tomato str. DC3000]
                           254
                           50.00
                           63.38
                           6
                           654.0
     

     






      

          
GC ORFID: 46136How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2425Glimmer Score: 

          
Start: 2042655Stop: 2041891

          
Length: 765


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2425 translation of PA2425Homolog Bit Score 505.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene933 (ORF: BLASTX 265.0), t_PA2411 (ORF: BLASTX 213.0), t_PA2425 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCCCGGCCGTTTCCCTGCAATTGTTCTGCCTGCCTTATTCGGGGGCCAGCGCCACGCTGTTCCGCCGC 
TGGCAGCCCAGCCTGCCGGGCTGGATCCGCTTGTTGCCCCTGGAATTGCCGGGGCGCGGCCTCCGCTTCGGC 
GAGGCCCTGCATACCGATGCCGCCAGCCTGGTCGCGCAATTGGCCAGCGAGCTGCAAGGCACCCTCGACAGC 
GCTTCTCCCTACGCCTTCTTCGGCCACAGCCTGGGCGGGCTGCTGGCCTTCGAACTGGCCCATGCCATGCGT 
CGGCGCGGCCTCGAAGGGCCGCTGGCGCTATTCCTCTCCGGTGTATCCCCGCCCGCCGAAAACGATGTCAGC 
GGCTACCGGCGCGCCAAGGCCGACGCCGAACTGGTTGCCGCGTTGCGCGACTACCGGGGTACTCCGGAGGCC 
GTCCTCAACGATCCGTCGCTGATGCAGATGCTGTTGCCAGTGGTGCGAGCGGACTTTCTCGTCACCGGCAGC 
TACCGCTACCAGGCGCATGGGCCGCTGGACGCGGCGCTGCACCTGTTCGGTGGACGCGAGGACAGCCTGCGC 
AGCGCCGAGTTGCTCGGCTGGCTGCATGAGGCCGGGGGCGACTTCACCCTCGACCTGCTCGACGGGCAGCAC 
TTTTTCATCCGCGAACAGCAGGGGCAGTTGCTGCGCCTGCTGCGTCGCTACGCCGGCCAGCATCTGCTGCGC 
TGGCACAAGGACAAGGTCCGGGGAAGCATGCGCGCCGCCAGTTGA