ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3131

TrivialName: PA14_55330

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55330

PAO1 Ortholog Locus: PA0695

Sequence Length: 747

Protein Length: 248

Start: 4912796

Stop: 4912050

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04084.1|AE004505_5 (AE004505) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 246/248 (99%), Positives = 246/248 (99%)

Sequence:

ATGAACATGTCCGCCGATCCCAAGCACACCCCCGAGCCGAAAAATGCCGCGCCGCTGTCCATCGACGGCCAC
CCGGCGAACCCGACCCTGCGCTACCTCAAGTGGGGCCTCGGCGCGCTGCTGCTCGCCGGCCTCGCCTGGCTG
GTCTGGGAGTGGGCCAACGACATGAGCGGCGTGCGCCGCGAGGCGCCCAAGGTGCCGGCGATCATCCCGCTG
CCGCCGCCGCCTCCGCCGCCGCCGGAAAAACCGCCGGAACCGGAGCAGCCGGTGGAAGAGGAAAAGATCGTC
GAGCCGGAACCGCAACCCGAACTGGAGGAGGTCAAGCCGCAGGAGGAAGCGCCGCCGTCGCCGGTCGACGAC
CTGGCCGACCCGATGCAGATGGATGGCGACGCCCAGTCCGGCTCCGACGCTTTCAACATCGGCGCCGGCAAG
GGCGGCGGGATGGCCGGTTCCGGCGGCGGTCGCGCCGGCAACGCCAGCTATAGCCAGTACCTGGCCTACGCC
TTCCAGCGCCTGCTGCGGGACAACCCGGAGCTGCGCAACCTGGCGTTCCGCCTGCAGGCGGAGATCTGGCTG
AGTTCCTCGGGGGATATCACCCGGGCCGAACTGACCCGCTCCAGCGGCGACCCCGAGACCGACCAGAAGGTG
CTGGCCGCGCTGCGCGCCGCCGGCCGCCTGGAAGAACGCCCGCCGGCTTCGCTGACCCTGCCGGTGCGCATC
GCCCTGCAGGGCAAGCGGCCGGGATGA

Translation:

MNMSADPKHTPEPKNAAPLSIDGHPANPTLRYLKWGLGALLLAGLAWLVWEWANDMSGVRREAPKVPAIIPL
PPPPPPPPEKPPEPEQPVEEEKIVEPEPQPELEEVKPQEEAPPSPVDDLADPMQMDGDAQSGSDAFNIGAGK
GGGMAGSGGGRAGNASYSQYLAYAFQRLLRDNPELRNLAFRLQAEIWLSSSGDITRAELTRSSGDPETDQKV
LAALRAAGRLEERPPASLTLPVRIALQGKRPG*

AnnotationID:3139 GeneID:3131

AnnotatorUID: danlee

Modification Date/Time: 2004-03-11 16:04:59

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0695

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0810: Periplasmic protein TonB?

Genomic Context:

Comment:

ReferenceID:6265

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23407

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3131

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5029 PA0695_tr translation of PA0695 248 99.19 99.19 0 1301.0

141401 gb|AAG04084.1|AE004505_5 (AE004505) hypothetical protein PA0695 [Pseudomonas aeruginosa PAO1] 248 99.19 99.19 0 1301.0

GC ORFID: `46133`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0695`	Glimmer Score:
Start: `41111`	Stop: `41857`
Length: `747`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0695 translation of PA0695`	Homolog Bit Score `505.0`
Other Homologs: `t_PA0695 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACATGTCCGCCGATCCCAAGCACACCCCCGAGCCGAAAAATGCCGCGCCGCTGTCCATCGACGGCCAC CCGGCGAACCCGACCCTGCGCTACCTCAAGTGGGGCCTCGGCGCGCTGCTGCTCGCCGGCCTCGCCTGGCTG GTCTGGGAGTGGGCCAACGACATGAGCGGCGTGCGCCGCGAGGCGCCCAAGGTGCCGGCGATCATCCCGCTG CCGCCGCCGCCTCCGCCGCCGCCGGAAAAACCGCCGGAACCGGAGCAGCCGGTGGAAGAGGAAAAGATCGTC GAGCCGGAACCGCAACCCGAACTGGAGGAGGTCAAGCCGCAGGAGGAAGCGCCGCCGTCGCCGGTCGACGAC CTGGCCGACCCGATGCAGATGGATGGCGACGCCCAGTCCGGCTCCGACGCTTTCAACATCGGCGCCGGCAAG GGCGGCGGGATGGCCGGTTCCGGCGGCGGTCGCGCCGGCAACGCCAGCTATAGCCAGTACCTGGCCTACGCC TTCCAGCGCCTGCTGCGGGACAACCCGGAGCTGCGCAACCTGGCGTTCCGCCTGCAGGCGGAGATCTGGCTG AGTTCCTCGGGGGATATCACCCGGGCCGAACTGACCCGCTCCAGCGGCGACCCCGAGACCGACCAGAAGGTG CTGGCCGCGCTGCGCGCCGCCGGCCGCCTGGAAGAACGCCCGCCGGCTTCGCTGACCCTGCCGGTGCGCATC GCCCTGCAGGGCAAGCGGCCGGGATGA