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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG03543.1|AE004453_6 (AE004453) protocatechuate 3,4-dioxygenase, beta subunit [Pseudomonas aeruginosa PAO1]
Identities = 239/239 (100%), Positives = 239/239 (100%)
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Sequence:
ATGCACGACGCCGAAAGCCGTCGTTTCGTCATCCGTGACCGAAACTGGCACCCCAAAGCCTTGACCCCCGAC
TACAAGACCTCCGTGCCGCGCTCGCCGAGCCAGGCGCTGGTGAGCATCCCGCAATCGCTCTCGGAAACCAGC
GGGCCGGACTTCTCCCACCTCAGGCTCGGCCGCCACGACAACGACCTGCTGCTCAACTTCGACCACGGCGGC
CTGCCCCAGGGCGAGCGCATCATCATGTTCGGCCGGGTCTTCGACCAGTACGGCAAGCCGGTCCCGCACACC
CTGGTGGAGATGTGGCAGGCCAACGCCGGCGGGCGCTACCGGCACAAGAACGACCGCTACCTGGCGCCGCTC
GACCCGAACTTCGGCGGCGTCGGCCGGACCCTCACCGACAGCGAGGGCCACTATTACTTCCGCACCATCAAG
CCCGGGCCCTATCCCTGGCGCAACGGCCCCAACGACTGGCGTCCGGCGCACATCCACGTGTCCGTCAGCGGC
CCGGCGATCGCCGCGCGGCTGGTCACCCAGATGTACTTCGAGGGCGACCCGCTGATCCCCAAGTGCCCGATC
ATCCGCACCCTTGCCGACCCGGAGGCGGCGCAGAGCCTGATCGGCCGGCTCGACATGAGCATGGCCAACCCG
ATGGATTGCCTGGCCTACCGCTTCGACATCGTCCTGCGCGGGCAGCGCAAGACCTTCTTCGAGAACGCCTGA
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Translation:
MHDAESRRFVIRDRNWHPKALTPDYKTSVPRSPSQALVSIPQSLSETSGPDFSHLRLGRHDNDLLLNFDHGG
LPQGERIIMFGRVFDQYGKPVPHTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRTLTDSEGHYYFRTIK
PGPYPWRNGPNDWRPAHIHVSVSGPAIAARLVTQMYFEGDPLIPKCPIIRTLADPEAAQSLIGRLDMSMANP
MDCLAYRFDIVLRGQRKTFFENA* |
AnnotationID:3138 | GeneID:3130 |
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Modification Date/Time: |
2005-03-23 06:06:14 |
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GeneProduct: | protocatechuate 3,4-dioxygenase, beta subunit |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (5) Carbon compound catabolism |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | biosynthesis of cofactors, prosthetic groups and carriers |
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Homology: | >gb|AAG17458.1|AF302797_4 (AF302797) protocatechuate 3,4 dioxygenase beta subunit
[Pseudomonas sp. IMT40] [Pseudomonas indica]
Length = 239
Score = 440 bits (1132), Expect = e-123
Identities = 196/234 (83%), Positives = 222/234 (94%)
>gb|AAO55850.1| (AE016864) protocatechuate 3,4-dioxygenase, beta subunit
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 239
Score = 422 bits (1086), Expect = e-118
Identities = 189/238 (79%), Positives = 218/238 (91%)
>emb|CAB99488.1| (AJ295623) b-subunit of protocatechuate 3,4-dioxygenase
[Pseudomonas putida]
Length = 239
Score = 415 bits (1067), Expect = e-115
Identities = 189/234 (80%), Positives = 213/234 (91%)
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Structural Features: | COG3485, PcaH, Protocatechuate 3,4-dioxygenase beta subunit
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 226 residues, 98.7% aligned
Score = 253 bits (646), Expect = 2e-68
Identities = 113/234 (48%), Positives = 137/234 (58%), Gaps = 11/234 (4%)
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Gene ID:3130 |
Identity: |
0% |
10% |
20% |
30% |
40% |
50% |
60% |
70% |
80% |
90% |
100% |
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HomologID |
Accession |
Description |
Length |
PctIdentity |
PctSimilarity |
Gaps |
Score |
5028 |
PA0153_tr |
translation of PA0153 |
239 |
99.99 |
99.99 |
0 |
1303.0 |
141347 |
gb|AAG03543.1|AE004453_6 |
(AE004453) protocatechuate 3,4-dioxygenase, beta subunit [Pseudomonas aeruginosa PAO1] |
239 |
99.99 |
99.99 |
0 |
1303.0 |
141349 |
emb|CAB43484.1| |
(Y18527) protocatechuate 3,4-dioxygenase beta subunit [Pseudomonas sp.] |
239 |
82.84 |
91.63 |
0 |
1115.0 |
141348 |
gb|AAG17458.1|AF302797_4 |
(AF302797) protocatechuate 3,4 dioxygenase beta subunit [Pseudomonas sp. IMT40] [Pseudomonas indica] |
239 |
82.42 |
93.30 |
0 |
1131.0 |
141352 |
gb|AAN70229.1|AE016662_5 |
(AE016791) protocatechuate 3,4-dioxygenase, beta subunit [Pseudomonas putida KT2440] |
239 |
79.91 |
89.95 |
0 |
1071.0 |
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