ViewGene

Locus Name:
GeneID:
Location:

GeneID:3130
TrivialName: PA14_01900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01900
PAO1 Ortholog Locus:PA0153
Sequence Length:720
Protein Length:239
Start: 173624
Stop: 174343
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03543.1|AE004453_6 (AE004453) protocatechuate 3,4-dioxygenase, beta subunit [Pseudomonas aeruginosa PAO1]
Identities = 239/239 (100%), Positives = 239/239 (100%)
Sequence:
ATGCACGACGCCGAAAGCCGTCGTTTCGTCATCCGTGACCGAAACTGGCACCCCAAAGCCTTGACCCCCGAC
TACAAGACCTCCGTGCCGCGCTCGCCGAGCCAGGCGCTGGTGAGCATCCCGCAATCGCTCTCGGAAACCAGC
GGGCCGGACTTCTCCCACCTCAGGCTCGGCCGCCACGACAACGACCTGCTGCTCAACTTCGACCACGGCGGC
CTGCCCCAGGGCGAGCGCATCATCATGTTCGGCCGGGTCTTCGACCAGTACGGCAAGCCGGTCCCGCACACC
CTGGTGGAGATGTGGCAGGCCAACGCCGGCGGGCGCTACCGGCACAAGAACGACCGCTACCTGGCGCCGCTC
GACCCGAACTTCGGCGGCGTCGGCCGGACCCTCACCGACAGCGAGGGCCACTATTACTTCCGCACCATCAAG
CCCGGGCCCTATCCCTGGCGCAACGGCCCCAACGACTGGCGTCCGGCGCACATCCACGTGTCCGTCAGCGGC
CCGGCGATCGCCGCGCGGCTGGTCACCCAGATGTACTTCGAGGGCGACCCGCTGATCCCCAAGTGCCCGATC
ATCCGCACCCTTGCCGACCCGGAGGCGGCGCAGAGCCTGATCGGCCGGCTCGACATGAGCATGGCCAACCCG
ATGGATTGCCTGGCCTACCGCTTCGACATCGTCCTGCGCGGGCAGCGCAAGACCTTCTTCGAGAACGCCTGA
Translation:
MHDAESRRFVIRDRNWHPKALTPDYKTSVPRSPSQALVSIPQSLSETSGPDFSHLRLGRHDNDLLLNFDHGG
LPQGERIIMFGRVFDQYGKPVPHTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRTLTDSEGHYYFRTIK
PGPYPWRNGPNDWRPAHIHVSVSGPAIAARLVTQMYFEGDPLIPKCPIIRTLADPEAAQSLIGRLDMSMANP
MDCLAYRFDIVLRGQRKTFFENA*
AnnotationID:3138GeneID:3130
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:14
Gene Name:pcaH
Confidence Code:2
GeneProduct:protocatechuate 3,4-dioxygenase, beta subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3485
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:1.13.11.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAG17458.1|AF302797_4 (AF302797) protocatechuate 3,4 dioxygenase beta subunit
           [Pseudomonas sp. IMT40] [Pseudomonas indica]
          Length = 239

 Score =  440 bits (1132), Expect = e-123
 Identities = 196/234 (83%), Positives = 222/234 (94%)

>gb|AAO55850.1| (AE016864) protocatechuate 3,4-dioxygenase, beta subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 239

 Score =  422 bits (1086), Expect = e-118
 Identities = 189/238 (79%), Positives = 218/238 (91%)

>emb|CAB99488.1| (AJ295623) b-subunit of protocatechuate 3,4-dioxygenase
           [Pseudomonas putida]
          Length = 239

 Score =  415 bits (1067), Expect = e-115
 Identities = 189/234 (80%), Positives = 213/234 (91%)




Structural Features:
COG3485, PcaH, Protocatechuate 3,4-dioxygenase beta subunit 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 226 residues,  98.7% aligned
Score =  253 bits (646), Expect = 2e-68
Identities = 113/234 (48%), Positives = 137/234 (58%), Gaps = 11/234 (4%)

Genomic Context:
Comment:
ReferenceID:6263
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23405
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33525
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3130_cdd.html
URL:
ReferenceID:35493
Author/Investigator(s): Petersen E, Zuegg J, Ribbons DW, Schwab H.
Title: Molecular cloning and homology modeling of protocatechuate 3,4-dioxygenase from Pseudomonas marginata.
PubMed: 9022300
MedLine:
Source:
Microbiol Res. 1996 Dec;151(4):359-70.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9022300
ReferenceID:35494
Author/Investigator(s): Frazee RW, Livingston DM, LaPorte DC, Lipscomb JD.
Title: Cloning, sequencing, and expression of the Pseudomonas putida protocatechuate 3,4-dioxygenase genes.
PubMed: 8407791
MedLine:
Source:
J Bacteriol. 1993 Oct;175(19):6194-202.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8407791
Homologs By Global Alignment
Gene ID:3130

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5028 PA0153_tr translation of PA0153 239 99.99 99.99 0 1303.0
141347 gb|AAG03543.1|AE004453_6 (AE004453) protocatechuate 3,4-dioxygenase, beta subunit [Pseudomonas aeruginosa PAO1] 239 99.99 99.99 0 1303.0
141349 emb|CAB43484.1| (Y18527) protocatechuate 3,4-dioxygenase beta subunit [Pseudomonas sp.] 239 82.84 91.63 0 1115.0
141348 gb|AAG17458.1|AF302797_4 (AF302797) protocatechuate 3,4 dioxygenase beta subunit [Pseudomonas sp. IMT40] [Pseudomonas indica] 239 82.42 93.30 0 1131.0
141352 gb|AAN70229.1|AE016662_5 (AE016791) protocatechuate 3,4-dioxygenase, beta subunit [Pseudomonas putida KT2440] 239 79.91 89.95 0 1071.0
GC ORFID: 46132How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0153Glimmer Score:
Start: 5974963Stop: 5975682
Length: 720
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0153 translation of PA0153Homolog Bit Score 506.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1094 (ORF: BLASTX 424.0), t_PA0153 (ORF: GLIMMER)
GC ORF Sequence
ATGCACGACGCCGAAAGCCGTCGTTTCGTCATCCGTGACCGAAACTGGCACCCCAAAGCCTTGACCCCCGAC
TACAAGACCTCCGTGCCGCGCTCGCCGAGCCAGGCGCTGGTGAGCATCCCGCAATCGCTCTCGGAAACCAGC
GGGCCGGACTTCTCCCACCTCAGGCTCGGCCGCCACGACAACGACCTGCTGCTCAACTTCGACCACGGCGGC
CTGCCCCAGGGCGAGCGCATCATCATGTTCGGCCGGGTCTTCGACCAGTACGGCAAGCCGGTCCCGCACACC
CTGGTGGAGATGTGGCAGGCCAACGCCGGCGGGCGCTACCGGCACAAGAACGACCGCTACCTGGCGCCGCTC
GACCCGAACTTCGGCGGCGTCGGCCGGACCCTCACCGACAGCGAGGGCCACTATTACTTCCGCACCATCAAG
CCCGGGCCCTATCCCTGGCGCAACGGCCCCAACGACTGGCGTCCGGCGCACATCCACGTGTCCGTCAGCGGC
CCGGCGATCGCCGCGCGGCTGGTCACCCAGATGTACTTCGAGGGCGACCCGCTGATCCCCAAGTGCCCGATC
ATCCGCACCCTTGCCGACCCGGAGGCGGCGCAGAGCCTGATCGGCCGGCTCGACATGAGCATGGCCAACCCG
ATGGATTGCCTGGCCTACCGCTTCGACATCGTCCTGCGCGGGCAGCGCAAGACCTTCTTCGAGAACGCCTGA