ViewGene
Locus Name:
GeneID:
Location:

GeneID:313
TrivialName: PA14_60950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60950
PAO1 Ortholog Locus:PA4606
Sequence Length:2067
Protein Length:688
Start: 5438311
Stop: 5436245
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07994.1|AE004874_7 (AE004874) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 687/688 (99%), Positives = 688/688 (100%)
Sequence:
ATGAACAATAACAATAGCCTGCTACGTCACCTCGCCTGGCTGGTGGTGGCGATCGTGGGCGCCGCGGCCCTG
GGCGTCGTCGCCCTGCGTCGTGGCGAAGCGATCAACGCCTTGTGGATCGTGGTGGCGGCGGTGGCCATCTAC
CTGGTCGCCTACCGTTACTACAGCCTGTTCATCGCCAGCAAGGTGATGCAACTGGACCCCAACCGCGCCACT
CCCGCGGTACTCAACAACGATGGCCTGGACTACGTCCCGACCAACAAGCACATCCTCTTCGGCCACCACTTC
GCCGCCATCGCCGGCGCCGGTCCGCTGGTCGGTCCGGTCCTTGCCGCGCAGATGGGCTACCTGCCCGGCACC
CTCTGGCTGATCGCCGGCGTAGTCCTCGCCGGCGCGGTGCAGGACTTCATGGTCCTGTTCATCTCCAGCCGC
CGCAACGGCCGCTCGCTGGGCGAGCTGGTGCGCGAGGAAATGGGCCAGGTGGCCGGGACCATCGCGCTGTTC
GGCGCCTTCCTGATCATGATCATCATCCTCGCGGTGCTCGCGCTGATCGTGGTGAAGGCTCTGGCCGACAGC
CCCTGGGGCATGTTCACCGTCCTCGCGACCATTCCCATCGCGCTGTTCATGGGCGTCTACATGCGCTTCATC
CGCCCCGGCCGGATCGGCGAGATCTCGATCATCGGGGTGTTCCTCCTGCTCGGTTCGATCTGGCTCGGCGGG
CAGGTCGCGGCCAGTCCGGAATGGGCGCCGCATTTCACCTTCAGTGGAATCCAGATCACCTGGATGCTGATC
GGCTACGGCGCCGTCGCCTCGGTACTGCCGGTGTGGCTGCTGCTGGCGCCGCGCGACTACCTGTCGACCTTC
CTCAAGATCGGCACCATCATCGGCCTGGCGATCGGCATCCTGATCGTCATGCCGGATCTGAAGATGCCGGCC
CTGACCCAGTTCACCGACGGCACCGGCCCGGTCTGGAAAGGCAGCCTGTTCCCGTTCCTGTTCATCACCATC
GCCTGCGGCGCGGTGTCCGGCTTCCACGCGCTGATCTCCTCGGGGACCACGCCGAAGCTGCTCAACCGCGAG
CCCGACGCCCGCTACATCGGCTACGGCGGCATGCTGATGGAGTCCTTCGTGGCGATCATGGCGATGGTCGCC
GCCTCGGTGATCGAGCCGGGCATCTACTTCGCCATGAACAGCCCGCCGGCGGTGGTCGGCGCCGACGTCAAC
GCGGTGGCCGCGACCGTCAGCAGCTGGGGCTTCGCCATCACGCCGGAGCAACTCACCCAGACCGCCCAGGAC
ATCGGCGAGACCACCATCCTGGCCCGTGCCGGCGGCGCGCCGACCCTGGCGGTGGGGATCGCGCACATCCTC
CACCAGGTGCTGCCGGGCGAGAACACCATGGCCTTCTGGTACCACTTCGCGATCCTCTTCGAGGCCTTGTTC
ATCCTCACCGCGGTGGACGCCGGCACCCGTGCCGGGCGCTTCATGCTGCAGGACCTGCTGGGCAACTTCGTG
CCGGCGCTGAAGAAGACCGAGTCGTGGACCGCCAACATCATCGGCACCGGCGGCTGCGTGGCGCTGTGGGGC
TGGCTGCTGTACCAGGGCGTGGTCGACCCGCTGGGTGGGATCAATACCCTGTGGCCGCTGTTCGGCATTTCC
AACCAGATGCTCGCCGGCATCGCGCTGATGCTCGCCACCGTGGTCCTGATCAAGATGAAGCGCCAGCAGTAT
GTCTGGGTCACCATCCTGCCGGCGGCCTGGCTGCTGATCTGCACCACCACCGCGGGCCTGATCAAGATCTTC
GACAGCAACCCGGCGGTCGGCTTCGTCGCCCTTGGCGAGAAGTACGCCACCGCGCTGGATGCTGGCCAGGTG
CTGGCGCCGGCCAAGGATATCGGCCAGATGCAGCACGTGGTGCTGAACGCCTACATCAACGCCGGTCTGACC
GTGCTGTTCCTGCTGGTGGTGTTCAGCGTACTGTTCTACGCCATCAAGGTCGGCATCGCGGCCTGGGGCAAG
AGCGAGCGGACCGACAAGGAAACCCCGTTCGAGCCCATTCCCGACGCCTGA
Translation:
MNNNNSLLRHLAWLVVAIVGAAALGVVALRRGEAINALWIVVAAVAIYLVAYRYYSLFIASKVMQLDPNRAT
PAVLNNDGLDYVPTNKHILFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFISSR
RNGRSLGELVREEMGQVAGTIALFGAFLIMIIILAVLALIVVKALADSPWGMFTVLATIPIALFMGVYMRFI
RPGRIGEISIIGVFLLLGSIWLGGQVAASPEWAPHFTFSGIQITWMLIGYGAVASVLPVWLLLAPRDYLSTF
LKIGTIIGLAIGILIVMPDLKMPALTQFTDGTGPVWKGSLFPFLFITIACGAVSGFHALISSGTTPKLLNRE
PDARYIGYGGMLMESFVAIMAMVAASVIEPGIYFAMNSPPAVVGADVNAVAATVSSWGFAITPEQLTQTAQD
IGETTILARAGGAPTLAVGIAHILHQVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLLGNFV
PALKKTESWTANIIGTGGCVALWGWLLYQGVVDPLGGINTLWPLFGISNQMLAGIALMLATVVLIKMKRQQY
VWVTILPAAWLLICTTTAGLIKIFDSNPAVGFVALGEKYATALDAGQVLAPAKDIGQMQHVVLNAYINAGLT
VLFLLVVFSVLFYAIKVGIAAWGKSERTDKETPFEPIPDA*
AnnotationID:323GeneID:313
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:14
Gene Name:
Confidence Code:3
GeneProduct:carbon starvation protein
Cell Localization:()
Synonyms:cstA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1966,pfam02554
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70214.1|AE016660_11 (AE016791) carbon starvation protein CstA [Pseudomonas putida
           KT2440]
          Length = 688

 Score = 1210 bits (3130), Expect = 0.0
 Identities = 593/688 (86%), Positives = 647/688 (94%)


>gb|AAG59536.1|AE005666_8 (AE005666) putative carbon starvation protein [Escherichia coli
           O157:H7 EDL933]
          Length = 721

 Score =  993 bits (2567), Expect = 0.0
 Identities = 488/708 (68%), Positives = 585/708 (82%), Gaps = 25/708 (3%)






 
Structural Features:
COG1966, CstA, Carbon starvation protein, predicted membrane protein 
[Signal transduction mechanisms]
CD-Length = 575 residues, 100.0% aligned
Score =  601 bits (1551), Expect = 2e-172
Identities = 294/658 (44%), Positives = 394/658 (59%), Gaps = 87/658 (13%)

pfam02554, CstA, Carbon starvation protein CstA.
CD-Length = 388 residues, 100.0% aligned
Score =  490 bits (1264), Expect = 4e-139
Identities = 260/400 (65%), Positives = 320/400 (80%), Gaps = 12/400 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:629




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17771




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31617




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:313_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:313
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
512
                           PA4606_tr
                           translation of PA4606
                           688
                           99.85
                           99.99
                           0
                           3507.0
     

     
     
25720
                           gb|AAG07994.1|AE004874_7
                           (AE004874) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           688
                           99.85
                           99.99
                           0
                           3507.0
     

     
     
25721
                           gb|AAN70214.1|AE016660_11
                           (AE016791) carbon starvation protein CstA [Pseudomonas putida KT2440]
                           688
                           86.19
                           94.04
                           0
                           3130.0
     

     
     
25723
                           gb|AAO58084.1|
                           (AE016872) carbon starvation protein CstA [Pseudomonas syringae pv. tomato str. DC3000]
                           691
                           85.09
                           93.05
                           3
                           3094.0
     

     
     
25724
                           gb|AAM41990.1|
                           (AE012384) carbon starvation protein A [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           694
                           77.66
                           86.02
                           10
                           2798.0
     

     






      

          
GC ORFID: 43315How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4606Glimmer Score: 

          
Start: 4701991Stop: 4699925

          
Length: 2067


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4606 translation of PA4606Homolog Bit Score 1355.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5403 (ORF: BLASTX 1200.0), t_PA4606 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAATAACAATAGCCTGCTACGTCACCTCGCCTGGCTGGTGGTGGCGATCGTGGGCGCCGCGGCCCTG 
GGCGTCGTCGCCCTGCGTCGTGGCGAAGCGATCAACGCCTTGTGGATCGTGGTGGCGGCGGTGGCCATCTAC 
CTGGTCGCCTACCGTTACTACAGCCTGTTCATCGCCAGCAAGGTGATGCAACTGGACCCCAACCGCGCCACT 
CCCGCGGTACTCAACAACGATGGCCTGGACTACGTCCCGACCAACAAGCACATCCTCTTCGGCCACCACTTC 
GCCGCCATCGCCGGCGCCGGTCCGCTGGTCGGTCCGGTCCTTGCCGCGCAGATGGGCTACCTGCCCGGCACC 
CTCTGGCTGATCGCCGGCGTAGTCCTCGCCGGCGCGGTGCAGGACTTCATGGTCCTGTTCATCTCCAGCCGC 
CGCAACGGCCGCTCGCTGGGCGAGCTGGTGCGCGAGGAAATGGGCCAGGTGGCCGGGACCATCGCGCTGTTC 
GGCGCCTTCCTGATCATGATCATCATCCTCGCGGTGCTCGCGCTGATCGTGGTGAAGGCTCTGGCCGACAGC 
CCCTGGGGCATGTTCACCGTCCTCGCGACCATTCCCATCGCGCTGTTCATGGGCGTCTACATGCGCTTCATC 
CGCCCCGGCCGGATCGGCGAGATCTCGATCATCGGGGTGTTCCTCCTGCTCGGTTCGATCTGGCTCGGCGGG 
CAGGTCGCGGCCAGTCCGGAATGGGCGCCGCATTTCACCTTCAGTGGAATCCAGATCACCTGGATGCTGATC 
GGCTACGGCGCCGTCGCCTCGGTACTGCCGGTGTGGCTGCTGCTGGCGCCGCGCGACTACCTGTCGACCTTC 
CTCAAGATCGGCACCATCATCGGCCTGGCGATCGGCATCCTGATCGTCATGCCGGATCTGAAGATGCCGGCC 
CTGACCCAGTTCACCGACGGCACCGGCCCGGTCTGGAAAGGCAGCCTGTTCCCGTTCCTGTTCATCACCATC 
GCCTGCGGCGCGGTGTCCGGCTTCCACGCGCTGATCTCCTCGGGGACCACGCCGAAGCTGCTCAACCGCGAG 
CCCGACGCCCGCTACATCGGCTACGGCGGCATGCTGATGGAGTCCTTCGTGGCGATCATGGCGATGGTCGCC 
GCCTCGGTGATCGAGCCGGGCATCTACTTCGCCATGAACAGCCCGCCGGCGGTGGTCGGCGCCGACGTCAAC 
GCGGTGGCCGCGACCGTCAGCAGCTGGGGCTTCGCCATCACGCCGGAGCAACTCACCCAGACCGCCCAGGAC 
ATCGGCGAGACCACCATCCTGGCCCGTGCCGGCGGCGCGCCGACCCTGGCGGTGGGGATCGCGCACATCCTC 
CACCAGGTGCTGCCGGGCGAGAACACCATGGCCTTCTGGTACCACTTCGCGATCCTCTTCGAGGCCTTGTTC 
ATCCTCACCGCGGTGGACGCCGGCACCCGTGCCGGGCGCTTCATGCTGCAGGACCTGCTGGGCAACTTCGTG 
CCGGCGCTGAAGAAGACCGAGTCGTGGACCGCCAACATCATCGGCACCGGCGGCTGCGTGGCGCTGTGGGGC 
TGGCTGCTGTACCAGGGCGTGGTCGACCCGCTGGGTGGGATCAATACCCTGTGGCCGCTGTTCGGCATTTCC 
AACCAGATGCTCGCCGGCATCGCGCTGATGCTCGCCACCGTGGTCCTGATCAAGATGAAGCGCCAGCAGTAT 
GTCTGGGTCACCATCCTGCCGGCGGCCTGGCTGCTGATCTGCACCACCACCGCGGGCCTGATCAAGATCTTC 
GACAGCAACCCGGCGGTCGGCTTCGTCGCCCTTGGCGAGAAGTACGCCACCGCGCTGGATGCTGGCCAGGTG 
CTGGCGCCGGCCAAGGATATCGGCCAGATGCAGCACGTGGTGCTGAACGCCTACATCAACGCCGGTCTGACC 
GTGCTGTTCCTGCTGGTGGTGTTCAGCGTACTGTTCTACGCCATCAAGGTCGGCATCGCGGCCTGGGGCAAG 
AGCGAGCGGACCGACAAGGAAACCCCGTTCGAGCCCATTCCCGACGCCTGA