ViewGene
Locus Name:
GeneID:
Location:

GeneID:3129
TrivialName: PA14_56430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56430
PAO1 Ortholog Locus:PA4341
Sequence Length:771
Protein Length:256
Start: 5033878
Stop: 5033108
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07729.1|AE004850_7 (AE004850) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 254/256 (99%), Positives = 255/256 (99%)
Sequence:
ATGCCGGAAAGAGAAGAGGCGGGAACCGTGCGTTCGGTGGAGCGCGCGCTGGCGATCCTCGATCTGCTGGGC
CAGCACCAGGCGCTGGGGCTCGAGGAACTGCATTACCTGACTGAGCTGCCCAAGGCCACGGTGTCGCGGCTG
CTGCATACCCTGCTGGAGCAGGGCTGGCTGTACCGCGGCTTGACCGACCGGCGCTACCGGCTGCGTTCCACC
CGCCTCTACGGTGACGCCGCCGAGCGCTTCCGCTGCCAGGTGGTGGAGCGTTCCGCGCCGCTGCTGGTGGAG
TTGAGCGAGCGCACCGGGCTGGTCGCCGATTTGTCGATTCTCGACGGCGACCGCCTGCTGGTGGCGGAAAGC
TCGGTGCCCGGCGTCCTGCGCAAGCGCTACCCGGCCAACCGGCTGGTGGTCGGCCAGCACGCCAGCCTGTTC
CATTCTGCCATGGGCAAGGCCTGCCTGGGCGAACTGGCAGACAGCGAGGTGCGCCGCCTGGCGCGCCAGCAC
CAGGTAGACGAGGACCTCTGGTTGCGCACCCGCGAGCAGGCCCACGGCCAGGGCTACGGCGAGCGTACCGAG
GGACACTGGGAGTATCCGGTGCGCCTGCCGTTCCTGATCCGCGCGGTGGCCTTGCCGGTACGCGCCCAGGGT
CGCCTGCTCGGCAGCGTGGCGCTGCACTGGCCGCGCGACCAGGATTGCGTCGAACGGGTGCGCCGCCGGCAC
CTGGGAACCCTGGCCGATACCGTCAGTCAGTTGCAGCACGCGCTCGACTGA
Translation:
MPEREEAGTVRSVERALAILDLLGQHQALGLEELHYLTELPKATVSRLLHTLLEQGWLYRGLTDRRYRLRST
RLYGDAAERFRCQVVERSAPLLVELSERTGLVADLSILDGDRLLVAESSVPGVLRKRYPANRLVVGQHASLF
HSAMGKACLGELADSEVRRLARQHQVDEDLWLRTREQAHGQGYGERTEGHWEYPVRLPFLIRAVALPVRAQG
RLLGSVALHWPRDQDCVERVRRRHLGTLADTVSQLQHALD*
AnnotationID:3137GeneID:3129
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 18:06:15
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4341
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1414
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1414, IclR, Transcriptional regulator [Transcription]
CD-Length = 246 residues,  99.6% aligned
Score =  128 bits (322), Expect = 8e-31
Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 9/250 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6261




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23403




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36690




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3129_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3129
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5027
                           PA4341_tr
                           translation of PA4341
                           256
                           99.21
                           99.60
                           0
                           1304.0
     

     
     
141346
                           gb|AAG07729.1|AE004850_7
                           (AE004850) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           256
                           99.21
                           99.60
                           0
                           1304.0
     

     






      

          
GC ORFID: 46131How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4341Glimmer Score: 

          
Start: 4297554Stop: 4296784

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4341 translation of PA4341Homolog Bit Score 506.0

          
Other Homologs:  t_PA4341 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGAAAGAGAAGAGGCGGGAACCGTGCGTTCGGTGGAGCGCGCGCTGGCGATCCTCGATCTGCTGGGC 
CAGCACCAGGCGCTGGGGCTCGAGGAACTGCATTACCTGACTGAGCTGCCCAAGGCCACGGTGTCGCGGCTG 
CTGCATACCCTGCTGGAGCAGGGCTGGCTGTACCGCGGCTTGACCGACCGGCGCTACCGGCTGCGTTCCACC 
CGCCTCTACGGTGACGCCGCCGAGCGCTTCCGCTGCCAGGTGGTGGAGCGTTCCGCGCCGCTGCTGGTGGAG 
TTGAGCGAGCGCACCGGGCTGGTCGCCGATTTGTCGATTCTCGACGGCGACCGCCTGCTGGTGGCGGAAAGC 
TCGGTGCCCGGCGTCCTGCGCAAGCGCTACCCGGCCAACCGGCTGGTGGTCGGCCAGCACGCCAGCCTGTTC 
CATTCTGCCATGGGCAAGGCCTGCCTGGGCGAACTGGCAGACAGCGAGGTGCGCCGCCTGGCGCGCCAGCAC 
CAGGTAGACGAGGACCTCTGGTTGCGCACCCGCGAGCAGGCCCACGGCCAGGGCTACGGCGAGCGTACCGAG 
GGACACTGGGAGTATCCGGTGCGCCTGCCGTTCCTGATCCGCGCGGTGGCCTTGCCGGTACGCGCCCAGGGT 
CGCCTGCTCGGCAGCGTGGCGCTGCACTGGCCGCGCGACCAGGATTGCGTCGAACGGGTGCGCCGCCGGCAC 
CTGGGAACCCTGGCCGATACCGTCAGTCAGTTGCAGCACGCGCTCGACTGA