ViewGene
Locus Name:
GeneID:
Location:

GeneID:3128
TrivialName: PA14_14690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14690
PAO1 Ortholog Locus:PA3817
Sequence Length:774
Protein Length:257
Start: 1252142
Stop: 1252915
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07204.1|AE004799_10 (AE004799) probable methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 256/257 (99%), Positives = 256/257 (99%)
Sequence:
TTGCTCGACCGTATTCGTGTGGTGTTGGTCAACACCAGTCATCCCGGCAACATCGGCGGGGCGGCCCGTGCC
ATGAAGAACATGGGCCTGTCGCAACTGGTGCTGGTGCAGCCGGAAAGCTTTCCCCACGGCGACGCGGTGGCG
CGGGCTTCCGGCGCCACCGACATCCTCGACGCCGCAAGGGTGGTGGACACCCTGGAAGAGGCCCTGAGCGGC
TGCAGCGTGGTGCTCGGCACCAGCGCCCGCGACCGGCGGATTCCCTGGCCGCTGCTGGATCCGCGCGAGTGC
GCGACGACCTGCCTGGAGCACCTGGAGGCGAATGGCGAGGTGGCCCTGGTATTCGGGCGCGAATATGCGGGT
TTGACCAACGAAGAATTGCAGCGCTGCCAGTTCCATGTGCATATCCCCTCCGATCCCGAGTTCGGCTCGCTG
AACCTGGCGGCCGCGGTCCAGGTGCTCACCTACGAGGTGCGCATGGCGTGGCTGGCGGCCCAGGGCAAGCCG
ACCAAGATGGAAAAGTTCGAGTCCACCTCGATGCTCAACACCGAGCTGGTGACGGCCGACGAGCTGGAACTC
TATTACGCGCATCTGGAGAGGACGCTGATCGATATCGGCTTCCTCGATCCGGAGAAGCCGCGCCACCTGATG
TCGCGGTTGCGGCGCCTGTATGGGCGCAGCGCGATCAGCAAGCTGGAAATGAATATCCTGCGCGGGATCCTG
ACCGAAACCCAGAAGGTGGCCCGAGGCCTGTCCTACAAGCGGAGTGACGACTGA
Translation:
MLDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALSG
CSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSL
NLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELVTADELELYYAHLERTLIDIGFLDPEKPRHLM
SRLRRLYGRSAISKLEMNILRGILTETQKVARGLSYKRSDD*
AnnotationID:3136GeneID:3128
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 12:12:21
Gene Name:
Confidence Code:3
GeneProduct:putative rRNA methylase
Cell Localization:()
Synonyms:PA3817
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0565,pfam00588
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66464.1|AE016275_9 (AE016777) RNA methyltransferase, TrmH family, group 1 [Pseudomonas
           putida KT2440]
          Length = 251

 Score =  364 bits (934), Expect = e-100
 Identities = 182/256 (71%), Positives = 211/256 (82%), Gaps = 5/256 (1%)

>gb|AAP17903.1| (AE016987) putative ATP synthase beta subunit [Shigella flexneri 2a
           str. 2457T]
          Length = 246

 Score =  253 bits (645), Expect = 1e-66
 Identities = 132/249 (53%), Positives = 170/249 (68%), Gaps = 7/249 (2%)








 
Structural Features:
COG0565, LasT, rRNA methylase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 242 residues,  98.3% aligned
Score =  299 bits (766), Expect = 6e-82
Identities = 131/249 (52%), Positives = 166/249 (66%), Gaps = 11/249 (4%)

pfam00588, SpoU_methylase, SpoU rRNA Methylase family. 
CD-Length = 143 residues, 100.0% aligned
Score = 95.3 bits (237), Expect = 1e-20
Identities = 43/153 (28%), Positives = 60/153 (39%), Gaps = 11/153 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14741




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23401




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31739




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3128_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3128
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5026
                           PA3817_tr
                           translation of PA3817
                           257
                           99.61
                           99.61
                           0
                           1302.0
     

     
     
141304
                           gb|AAG07204.1|AE004799_10
                           (AE004799) probable methyltransferase [Pseudomonas aeruginosa PAO1]
                           257
                           99.22
                           99.61
                           0
                           1300.0
     

     
     
141305
                           gb|AAC24483.1|
                           (AF010139) unknown [Azotobacter vinelandii]
                           257
                           78.59
                           85.99
                           0
                           1037.0
     

     
     
141306
                           gb|AAN66464.1|AE016275_9
                           (AE016777) RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida KT2440]
                           257
                           70.42
                           82.10
                           6
                           935.0
     

     
     
141307
                           gb|AAO54941.1|
                           (AE016860) RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato str. DC3000]
                           257
                           69.26
                           78.98
                           0
                           897.0
     

     






      

          
GC ORFID: 46130How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3817Glimmer Score: 

          
Start: 3701796Stop: 3701023

          
Length: 774


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3817 translation of PA3817Homolog Bit Score 506.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4514 (ORF: BLASTX 346.0), t_PA3817 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCTCGACCGTATTCGTGTGGTGTTGGTCAACACCAGTCATCCCGGCAACATCGGCGGGGCGGCCCGTGCC 
ATGAAGAACATGGGCCTGTCGCAACTGGTGCTGGTGCAGCCGGAAAGCTTTCCCCACGGCGACGCGGTGGCG 
CGGGCTTCCGGCGCCACCGACATCCTCGACGCCGCAAGGGTGGTGGACACCCTGGAAGAGGCCCTGAGCGGC 
TGCAGCGTGGTGCTCGGCACCAGCGCCCGCGACCGGCGGATTCCCTGGCCGCTGCTGGATCCGCGCGAGTGC 
GCGACGACCTGCCTGGAGCACCTGGAGGCGAATGGCGAGGTGGCCCTGGTATTCGGGCGCGAATATGCGGGT 
TTGACCAACGAAGAATTGCAGCGCTGCCAGTTCCATGTGCATATCCCCTCCGATCCCGAGTTCGGCTCGCTG 
AACCTGGCGGCCGCGGTCCAGGTGCTCACCTACGAGGTGCGCATGGCGTGGCTGGCGGCCCAGGGCAAGCCG 
ACCAAGATGGAAAAGTTCGAGTCCACCTCGATGCTCAACACCGAGCTGGTGACGGCCGACGAGCTGGAACTC 
TATTACGCGCATCTGGAGAGGACGCTGATCGATATCGGCTTCCTCGATCCGGAGAAGCCGCGCCACCTGATG 
TCGCGGTTGCGGCGCCTGTATGGGCGCAGCGCGATCAGCAAGCTGGAAATGAATATCCTGCGCGGGATCCTG 
ACCGAAACCCAGAAGGTGGCCCGAGGCCTGTCCTACAAGCGGAGTGACGACTGA