ViewGene

Locus Name:
GeneID:
Location:

GeneID:3127
TrivialName: PA14_17850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17850
PAO1 Ortholog Locus:PA3591
Sequence Length:798
Protein Length:265
Start: 1532483
Stop: 1533280
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06979.1|AE004779_11 (AE004779) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 262/265 (98%), Positives = 264/265 (99%)
Sequence:
ATGGATTCCTCCCCTGGGGCGGTGAGCCCCGAACTCGTGCTGCTGGACCGGCCGGAGCAGGGCGTGGCCCTG
TTGCGACTGAACCGCCCGGCAGTACTCAACGCCCTGAACATGCGCCTGCGCGAGGCTCTGGCGGAGTACGTA
CGGCGCCTCGACGAGTGCGCCGATACCCGGGTCATCGTCCTCACCGGAAATGGCACGGCGTTCGCCGCCGGC
GCCGATCTCAACGAACTGGCGGAGGCGTCCGCGCTGGAGATCCAGCAGCGCGGGGTGGAGCGCCACTGGCAG
GCGCTCGCCGCCTGCCGCAAGCCGCTGATCGCCGCCGTGGAGGGCCATGCCCTGGGCGGAGGCTGCGAGTTG
GCGATGCACTGCGACCTGATCGTCGCCGGTGCCTCGGCGCGCTTCGCCCAGCCGGAAATCCGTGTCGGCGTG
ATGCCCGGCGCCGGCGGCACCCAGCGCCTGGTGCGAGCGGTGGGCAAGTTCCAGGCGCTGCGCATGCTGTTT
ACCGGTTGCACGGTACGGGCGCCGGAGGCCCTGGCCATAGGGTTGGTCAGCGAGGTGGCGGCGGATGGCCAG
GCATTGGATCGCGCCCTCGAACTGGCTCGCCAGATCGCCGGCCTGCCGCCGCTGGCGCTGGCGCAGATCAAG
GAAGTGGTCCTGGCCGGCGCCGACCTGCCGCTGGACCAGGCCCTGGCGCTGGAGCGCAAGGCCTTCCAGTTG
CTGTTCGACAGCCACGACCAGAAGGAGGGCATGCGTGCCTTCCTGGAAAAACGCACAGCGGAGTACCTGGGA
AAATGA
Translation:
MDSSPGAVSPELVLLDRPEQGVALLRLNRPAVLNALNMRLREALAEYVRRLDECADTRVIVLTGNGTAFAAG
ADLNELAEASALEIQQRGVERHWQALAACRKPLIAAVEGHALGGGCELAMHCDLIVAGASARFAQPEIRVGV
MPGAGGTQRLVRAVGKFQALRMLFTGCTVRAPEALAIGLVSEVAADGQALDRALELARQIAGLPPLALAQIK
EVVLAGADLPLDQALALERKAFQLLFDSHDQKEGMRAFLEKRTAEYLGK*
AnnotationID:3135GeneID:3127
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 11:11:45
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl-CoA hydratase/isomerase family protein
Cell Localization:()
Synonyms:fadB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1680,COG1024,pfam00378
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN33426.1|AE014524_1 (AE014524) enoyl-CoA hydratase/isomerase family protein [Brucella
           suis 1330]
          Length = 253

 Score =  302 bits (774), Expect = 1e-81
 Identities = 156/251 (62%), Positives = 188/251 (74%)

>gb|AAL59349.1|AF454951_27 (AF454951) putative enoyl-CoA hydratase/isomerase [Brucella
           melitensis biovar Abortus]
          Length = 268

 Score =  267 bits (682), Expect = 5e-71
 Identities = 138/255 (54%), Positives = 184/255 (72%)

Structural Features:
KOG1680, Enoyl-CoA hydratase [Lipid transport and metabolism]
CD-Length = 290 residues,  90.7% aligned
Score =  227 bits (580), Expect = 2e-60
Identities = 113/263 (42%), Positives = 152/263 (57%)

COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
CD-Length = 257 residues,  97.3% aligned
Score =  204 bits (519), Expect = 3e-53
Identities = 117/251 (46%), Positives = 159/251 (63%), Gaps = 5/251 (1%)

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family.
CD-Length = 168 residues,  98.8% aligned
Score =  153 bits (389), Expect = 3e-38
Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Genomic Context:
Comment:
ReferenceID:6257
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23399
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31952
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3127_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3127

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5024 PA3591_tr translation of PA3591 265 98.86 99.62 0 1302.0
141223 gb|AAG06979.1|AE004779_11 (AE004779) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1] 265 98.86 99.62 0 1302.0
5025 PA1629_tr translation of PA1629 265 69.43 78.49 4 883.0
141224 gb|AAG05018.1|AE004590_9 (AE004590) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1] 265 69.43 78.49 4 883.0
141225 emb|CAC28159.1| (AJ278289) putative hydrolase [Thauera aromatica] 265 60.00 71.32 9 776.0
GC ORFID: 46129How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3591Glimmer Score:
Start: 3421453Stop: 3420656
Length: 798
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3591 translation of PA3591Homolog Bit Score 506.0
Other Homologs: t_PA1629 (ORF: BLASTX 345.0), psyr_15may02_Scaffold4_revised_gene5257 (ORF: BLASTX 198.0), t_PA3591 (ORF: GLIMMER)
GC ORF Sequence
ATGGATTCCTCCCCTGGGGCGGTGAGCCCCGAACTCGTGCTGCTGGACCGGCCGGAGCAGGGCGTGGCCCTG
TTGCGACTGAACCGCCCGGCAGTACTCAACGCCCTGAACATGCGCCTGCGCGAGGCTCTGGCGGAGTACGTA
CGGCGCCTCGACGAGTGCGCCGATACCCGGGTCATCGTCCTCACCGGAAATGGCACGGCGTTCGCCGCCGGC
GCCGATCTCAACGAACTGGCGGAGGCGTCCGCGCTGGAGATCCAGCAGCGCGGGGTGGAGCGCCACTGGCAG
GCGCTCGCCGCCTGCCGCAAGCCGCTGATCGCCGCCGTGGAGGGCCATGCCCTGGGCGGAGGCTGCGAGTTG
GCGATGCACTGCGACCTGATCGTCGCCGGTGCCTCGGCGCGCTTCGCCCAGCCGGAAATCCGTGTCGGCGTG
ATGCCCGGCGCCGGCGGCACCCAGCGCCTGGTGCGAGCGGTGGGCAAGTTCCAGGCGCTGCGCATGCTGTTT
ACCGGTTGCACGGTACGGGCGCCGGAGGCCCTGGCCATAGGGTTGGTCAGCGAGGTGGCGGCGGATGGCCAG
GCATTGGATCGCGCCCTCGAACTGGCTCGCCAGATCGCCGGCCTGCCGCCGCTGGCGCTGGCGCAGATCAAG
GAAGTGGTCCTGGCCGGCGCCGACCTGCCGCTGGACCAGGCCCTGGCGCTGGAGCGCAAGGCCTTCCAGTTG
CTGTTCGACAGCCACGACCAGAAGGAGGGCATGCGTGCCTTCCTGGAAAAACGCACAGCGGAGTACCTGGGA
AAATGA