ViewGene
Locus Name:
GeneID:
Location:

GeneID:3126
TrivialName: PA14_26940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26940
PAO1 Ortholog Locus:PA2872
Sequence Length:771
Protein Length:256
Start: 2343997
Stop: 2344767
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06260.1|AE004713_9 (AE004713) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 254/256 (99%), Positives = 255/256 (99%)
Sequence:
ATGACGGGGTTCATCGATGAACTGCTGGCCGAGGTGATCGGCCAGCAGGTGGCGTTGATGTCGGCGGTCGCC
CGCCTGGAGGCGCGCACGGATGGCGAGGCACTGCACGACCTGCGCATCGCCCTGCGCCGTCTGCGCAGCCTG
CTGCGGCCGATCCGCGGGGTTCCCGGCGTCGAGGAACTGGAGCATGCCGCCGCCGAGATCGGGCGGCTCAGC
GGGCCGATCCGCGACCTGGAGGTGCTGCTGCCGGCGCTCGCCGCCGAAGGGCTGCGGGATGCGCTGGCGGTG
CGCCGGCCGGTGCTGGAGTCCGGCTACGTGGCGGTTCTCGCCAGCCAGCCGCTGCACCGCCTGCAGCTTTGC
CTGGACGTATGGCCGGCCCTGTTGCGTACGGCCCAGCGGCATGCCGTGCTGGATGGCTTGCACGGCCGGGTG
CGCAAGCGCCTGCGCCGGCAATGGAAGACCCTGCGCGCCGAGCTGGCGGACACCACCTACGAGCACTGGCAC
CCGCTACGGCTGCGGATCAAGCGCGTGCGCTACGGGCTGGAGGCCTATCCGCACGATTGCAGCATTCCCGGC
TCGCTGCTGGCGCCGCTCAAGGCGGCCCAGTCGGCGCTGGGCGATTGGCACGACCTCGAACAGTGGCTGTTG
CGATGCCAGCGCGAGCCGGATCTGGCGCCCGTGCGCGAGGTCTGGACGGCACGCTTCGAACTGGCCCGGGAG
CGTGCCGGACGGGCCCTGTCGAGATTGCAGCAGGCGCTTGCCGGGCACTGA
Translation:
MTGFIDELLAEVIGQQVALMSAVARLEARTDGEALHDLRIALRRLRSLLRPIRGVPGVEELEHAAAEIGRLS
GPIRDLEVLLPALAAEGLRDALAVRRPVLESGYVAVLASQPLHRLQLCLDVWPALLRTAQRHAVLDGLHGRV
RKRLRRQWKTLRAELADTTYEHWHPLRLRIKRVRYGLEAYPHDCSIPGSLLAPLKAAQSALGDWHDLEQWLL
RCQREPDLAPVREVWTARFELARERAGRALSRLQQALAGH*
AnnotationID:3134GeneID:3126
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 07:07:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2872
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23397




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36176




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3126_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3126
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5023
                           PA2872_tr
                           translation of PA2872
                           256
                           99.21
                           99.60
                           0
                           1302.0
     

     
     
141220
                           gb|AAG06260.1|AE004713_9
                           (AE004713) hypothetical protein PA2872 [Pseudomonas aeruginosa PAO1]
                           256
                           99.21
                           99.60
                           0
                           1302.0
     

     
     
141222
                           gb|AAN67920.1|AE016424_6
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           260
                           43.07
                           55.76
                           5
                           489.0
     

     
     
141221
                           gb|AAO55767.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           256
                           42.18
                           57.03
                           3
                           491.0
     

     






      

          
GC ORFID: 46128How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2872Glimmer Score: 

          
Start: 2609929Stop: 2609159

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2872 translation of PA2872Homolog Bit Score 506.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1043 (ORF: BLASTX 201.0), t_PA2872 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGGGTTCATCGATGAACTGCTGGCCGAGGTGATCGGCCAGCAGGTGGCGTTGATGTCGGCGGTCGCC 
CGCCTGGAGGCGCGCACGGATGGCGAGGCACTGCACGACCTGCGCATCGCCCTGCGCCGTCTGCGCAGCCTG 
CTGCGGCCGATCCGCGGGGTTCCCGGCGTCGAGGAACTGGAGCATGCCGCCGCCGAGATCGGGCGGCTCAGC 
GGGCCGATCCGCGACCTGGAGGTGCTGCTGCCGGCGCTCGCCGCCGAAGGGCTGCGGGATGCGCTGGCGGTG 
CGCCGGCCGGTGCTGGAGTCCGGCTACGTGGCGGTTCTCGCCAGCCAGCCGCTGCACCGCCTGCAGCTTTGC 
CTGGACGTATGGCCGGCCCTGTTGCGTACGGCCCAGCGGCATGCCGTGCTGGATGGCTTGCACGGCCGGGTG 
CGCAAGCGCCTGCGCCGGCAATGGAAGACCCTGCGCGCCGAGCTGGCGGACACCACCTACGAGCACTGGCAC 
CCGCTACGGCTGCGGATCAAGCGCGTGCGCTACGGGCTGGAGGCCTATCCGCACGATTGCAGCATTCCCGGC 
TCGCTGCTGGCGCCGCTCAAGGCGGCCCAGTCGGCGCTGGGCGATTGGCACGACCTCGAACAGTGGCTGTTG 
CGATGCCAGCGCGAGCCGGATCTGGCGCCCGTGCGCGAGGTCTGGACGGCACGCTTCGAACTGGCCCGGGAG 
CGTGCCGGACGGGCCCTGTCGAGATTGCAGCAGGCGCTTGCCGGGCACTGA