ViewGene
Locus Name:
GeneID:
Location:

GeneID:3125
TrivialName: PA14_51250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51250
PAO1 Ortholog Locus:PA1012
Sequence Length:759
Protein Length:252
Start: 4554655
Stop: 4553897
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04401.1|AE004533_12 (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 252/252 (100%), Positives = 252/252 (100%)
Sequence:
ATGCGGTTCGCGGTTCTGGGCAGCGGAAGCCGGGGCAATTCGGCCTTGGTGAGCAGTTCTGACACCCGGATA
CTGATCGATTGCGGCTTCCCGCTGCGTGAAATCATCAAGCGTCTGGCGCGCCTGGGGCTGAGTCCCGCGCAG
CTGGACGCGATCCTGGTCACGCACGAACACGCCGATCACATCCATGGCGTCGAACTGCTGGCGCGGCATTAC
CAAATCCCGGTCTATCTCAGTGCGGGTACCCTGAGCGGCATGCGCCGCCCGGTGCACCCCGTCGAGCTGTTG
AGGGCCGGCCAGCGCCTGGCGATCCGCGGGCTGGAAGTGCAGGTGGTTGGCGTCTCGCACGACGCCCGCGAG
CCTACCCAGTTCGTGCTGTCCGACGGACAGCGGCGCTTCGGCATGCTCACCGATCTGGGAGTGGCCACGGCC
GAGGTGCTGGAGTGCTATCGTGCGGTGGATGCTCTGGTGGTCGAGGCCAACCACGACAGCACGATGCTTGCC
GGTGGCCCGTATCCCTATTTTCTCAAGGCCCGCGTAGGCGGTTCGCGAGGGCACTTGAACAACCATCAGTCC
GCAGAACTGGTGAAGCAGCTGGATTGGGGTCGCATGCAGCACCTGGTGCTGGCCCATCTCAGCGAAAAGAAC
AACTCGCCGCAGCTGGCCCGGCAAACCTTCGTCGACACCCTCGGGTGCGATCCGGGCTGGCTGCAGGTGGCC
GATCAGCATTCAGGCCTGGATTGGCGCGAGATCGCCTAG
Translation:
MRFAVLGSGSRGNSALVSSSDTRILIDCGFPLREIIKRLARLGLSPAQLDAILVTHEHADHIHGVELLARHY
QIPVYLSAGTLSGMRRPVHPVELLRAGQRLAIRGLEVQVVGVSHDAREPTQFVLSDGQRRFGMLTDLGVATA
EVLECYRAVDALVVEANHDSTMLAGGPYPYFLKARVGGSRGHLNNHQSAELVKQLDWGRMQHLVLAHLSEKN
NSPQLARQTFVDTLGCDPGWLQVADQHSGLDWREIA*
AnnotationID:3133GeneID:3125
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:56
Gene Name:
Confidence Code:3
GeneProduct:Putative metal-dependent hydrolase
Cell Localization:()
Synonyms:PA1012, yycJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1235
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I 
[General function prediction only]
        CD-Length = 269 residues,  94.4% aligned
        Score =  155 bits (393), Expect = 4e-39






   
Genomic Context:






   
Comment:


















    ReferenceID:6253




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23395




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3125
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5022
                           PA1012_tr
                           translation of PA1012
                           252
                           99.99
                           99.99
                           0
                           1303.0
     

     
     
141215
                           gb|AAG04401.1|AE004533_12
                           (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           252
                           99.99
                           99.99
                           0
                           1303.0
     

     
     
141216
                           gb|AAO57412.1|
                           (AE016870) metallo-beta-lactamase superfamily protein [Pseudomonas syringae pv. tomato str. DC3000]
                           252
                           67.06
                           78.17
                           0
                           885.0
     

     
     
141217
                           gb|AAN66863.1|AE016314_10
                           (AE016778) metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
                           252
                           66.66
                           76.58
                           0
                           868.0
     

     
     
141218
                           emb|CAD14849.1|
                           (AL646062) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           264
                           44.69
                           58.71
                           15
                           554.0
     

     






      

          
GC ORFID: 46127How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1012Glimmer Score: 

          
Start: 399252Stop: 400010

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1012 translation of PA1012Homolog Bit Score 506.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1727 (ORF: BLASTX 345.0), t_PA1012 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGTTCGCGGTTCTGGGCAGCGGAAGCCGGGGCAATTCGGCCTTGGTGAGCAGTTCTGACACCCGGATA 
CTGATCGATTGCGGCTTCCCGCTGCGTGAAATCATCAAGCGTCTGGCGCGCCTGGGGCTGAGTCCCGCGCAG 
CTGGACGCGATCCTGGTCACGCACGAACACGCCGATCACATCCATGGCGTCGAACTGCTGGCGCGGCATTAC 
CAAATCCCGGTCTATCTCAGTGCGGGTACCCTGAGCGGCATGCGCCGCCCGGTGCACCCCGTCGAGCTGTTG 
AGGGCCGGCCAGCGCCTGGCGATCCGCGGGCTGGAAGTGCAGGTGGTTGGCGTCTCGCACGACGCCCGCGAG 
CCTACCCAGTTCGTGCTGTCCGACGGACAGCGGCGCTTCGGCATGCTCACCGATCTGGGAGTGGCCACGGCC 
GAGGTGCTGGAGTGCTATCGTGCGGTGGATGCTCTGGTGGTCGAGGCCAACCACGACAGCACGATGCTTGCC 
GGTGGCCCGTATCCCTATTTTCTCAAGGCCCGCGTAGGCGGTTCGCGAGGGCACTTGAACAACCATCAGTCC 
GCAGAACTGGTGAAGCAGCTGGATTGGGGTCGCATGCAGCACCTGGTGCTGGCCCATCTCAGCGAAAAGAAC 
AACTCGCCGCAGCTGGCCCGGCAAACCTTCGTCGACACCCTCGGGTGCGATCCGGGCTGGCTGCAGGTGGCC 
GATCAGCATTCAGGCCTGGATTGGCGCGAGATCGCCTAG