ViewGene
Locus Name:
GeneID:
Location:

GeneID:3124
TrivialName: PA14_15250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15250
PAO1 Ortholog Locus:PA3775
Sequence Length:783
Protein Length:260
Start: 1292312
Stop: 1293094
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07162.1|AE004796_7 (AE004796) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 257/260 (98%), Positives = 258/260 (99%)
Sequence:
ATGTCCTCGCTCGATCCGTCAGTCCTGTTCGCCGCCCTGCCGTTCAGCCTATGGCAATGGCTGCTGGTCGAA
CTGGCCATCGTCCTCGCCTATGTGGTGTTCGGCATCGCCGGCTTCGGCACCGCGCTGGTCGCCGGCCCGTTG
CTGGCCGGGGTGCTGCCGCTGTCGCAGATCATTCCGCTGCTGGTCCTGCTGGATTTCAGCGCGTCGTTCGGC
AACTGGCTGCCGGCGCGGCGGCAGATCGCCGTCACTGAACTCAAGCGTCTGCTGCCCTGCATGCTGCTGGGC
TGTGCGCTCGGGGCGTACGGACTTCTGGCGCTACGCGCGGAGCTGCTGATGCTGGCCCTCGGCGTGTTCGTC
AGTCTCTATGCGCTCTACGCGCTGTTCCTCCAGCCACTCGGCCAGCCGCGCTGGCGGGCGACCTGGGCGTTG
CCGTTCGGTGTCTTCGGCGGGCTGTTCGGCGCGTTGTTCGGCAGCGGCGGCTTCCTCTATGCGCTGTACCTG
AACGGACGCCTGGCGAGCAAGGAGCAGATGCGCGCCACCCAGAGCGCGCTGATCGGTTGTAGCACCTTCGTC
CGCCTGGGGCTGTTCCTGCTCGCCGGGCTGTATGCCGCGCGCGAGCCCTGGCTGTTCGCCGCCTGCCTGCTG
CCGGGCATGGCGCTGGGCCTGTGGATCGGCCGTCGGGTGACCCTGCGTCTGTCGCGTGAAGCCTTCGTCCGC
CTGGTCACCTGGCTGGTGCTGTGCAGCGGCCTGGCGCTGGTCGGGCGCTACCTGGCCGCCTGA
Translation:
MSSLDPSVLFAALPFSLWQWLLVELAIVLAYVVFGIAGFGTALVAGPLLAGVLPLSQIIPLLVLLDFSASFG
NWLPARRQIAVTELKRLLPCMLLGCALGAYGLLALRAELLMLALGVFVSLYALYALFLQPLGQPRWRATWAL
PFGVFGGLFGALFGSGGFLYALYLNGRLASKEQMRATQSALIGCSTFVRLGLFLLAGLYAAREPWLFAACLL
PGMALGLWIGRRVTLRLSREAFVRLVTWLVLCSGLALVGRYLAA*
AnnotationID:3132GeneID:3124
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 17:05:52
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3775
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01925
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31486.1| (BX640440) putative membrane protein [Bordetella bronchiseptica]
          Length = 246

 Score =  111 bits (278), Expect = 4e-24
 Identities = 84/233 (36%), Positives = 120/233 (51%), Gaps = 7/233 (3%)








 
Structural Features:
pfam01925, DUF81 This integral membrane protein family has 
no known function.
CD-Length = 259 residues, 100.0% aligned
Score = 72.7 bits (178), Expect = 9e-14
Identities = 77/262 (29%), Positives = 108/262 (41%), Gaps = 31/262 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6251




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23393




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31780




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:3124_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3124
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5021
                           PA3775_tr
                           translation of PA3775
                           260
                           98.84
                           99.23
                           0
                           1305.0
     

     
     
141212
                           gb|AAG07162.1|AE004796_7
                           (AE004796) hypothetical protein PA3775 [Pseudomonas aeruginosa PAO1]
                           260
                           98.84
                           99.23
                           0
                           1305.0
     

     
     
141213
                           gb|AAN66654.1|AE016293_4
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           260
                           63.07
                           74.61
                           9
                           800.0
     

     
     
141214
                           emb|CAE16797.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           262
                           40.83
                           63.35
                           14
                           523.0
     

     






      

          
GC ORFID: 46126How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3775Glimmer Score: 

          
Start: 3661625Stop: 3660843

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3775 translation of PA3775Homolog Bit Score 507.0

          
Other Homologs:  t_PA3775 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTCGCTCGATCCGTCAGTCCTGTTCGCCGCCCTGCCGTTCAGCCTATGGCAATGGCTGCTGGTCGAA 
CTGGCCATCGTCCTCGCCTATGTGGTGTTCGGCATCGCCGGCTTCGGCACCGCGCTGGTCGCCGGCCCGTTG 
CTGGCCGGGGTGCTGCCGCTGTCGCAGATCATTCCGCTGCTGGTCCTGCTGGATTTCAGCGCGTCGTTCGGC 
AACTGGCTGCCGGCGCGGCGGCAGATCGCCGTCACTGAACTCAAGCGTCTGCTGCCCTGCATGCTGCTGGGC 
TGTGCGCTCGGGGCGTACGGACTTCTGGCGCTACGCGCGGAGCTGCTGATGCTGGCCCTCGGCGTGTTCGTC 
AGTCTCTATGCGCTCTACGCGCTGTTCCTCCAGCCACTCGGCCAGCCGCGCTGGCGGGCGACCTGGGCGTTG 
CCGTTCGGTGTCTTCGGCGGGCTGTTCGGCGCGTTGTTCGGCAGCGGCGGCTTCCTCTATGCGCTGTACCTG 
AACGGACGCCTGGCGAGCAAGGAGCAGATGCGCGCCACCCAGAGCGCGCTGATCGGTTGTAGCACCTTCGTC 
CGCCTGGGGCTGTTCCTGCTCGCCGGGCTGTATGCCGCGCGCGAGCCCTGGCTGTTCGCCGCCTGCCTGCTG 
CCGGGCATGGCGCTGGGCCTGTGGATCGGCCGTCGGGTGACCCTGCGTCTGTCGCGTGAAGCCTTCGTCCGC 
CTGGTCACCTGGCTGGTGCTGTGCAGCGGCCTGGCGCTGGTCGGGCGCTACCTGGCCGCCTGA