ViewGene

Locus Name:
GeneID:
Location:

GeneID:3122
TrivialName: PA14_16770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16770
PAO1 Ortholog Locus:PA3680
Sequence Length:786
Protein Length:261
Start: 1434813
Stop: 1435598
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07068.1|AE004787_8 (AE004787) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 257/261 (98%), Positives = 258/261 (98%)
Sequence:
ATGACCGATTCCACCGCTCCTCGCCTGCATGTCCAAGCCCTGTCCGCCGATTGCGCCGAGGCTGCGCGGCGC
TGGGCGGAGCGGCTCGGCCTGCCGTTGGCGGCGGACGACGAGGCGGAGTTCGCCGTGCAGGTCGGCGAGGAG
GGCTTGCAGGTCTTGCAACTGGGGCCGGACTCCCCCGGTCCGGTGCGGGTCGATTTCGTCGAAGGCGCCAGC
GCCCACCGGCGCAAGTTCGGCGGCGGCAGCGGGCAGATGATCGCCAAGGCGGTCGGCGTCCAGCCAGGCATC
CGCCCGCGCGTCCTGGATGCCACGGCCGGCCTGGGCCGGGATGGGTTCGTCCTCGCTAGCCTGGGTTGCGAG
GTAACCCTGGTCGAGCGCCAGCCGCTGATCGCCGCCCTGCTCGAGGATGGCCTGGAGCGCGCCGGGCGCGAT
CCCGACGTGGCGCCGATCGCCGCGCGGATGCGTCTGCTCGGCGGCAACTCGGCGGACCTGATGCGCGCCTGG
GACGGCGAGGCGCCGCAGGTGGTCTACCTCGACCCGATGTTTCCCCATCGCGACAAGAGCGCATTGGTGAAG
AAGGAAATGCGTCTGTTCCGGCCGCTGGTGGGCGACGATCTCGACGCTCCGGCGCTGTTGCAGGCGGCCCTG
GCCCTGGCCAGCCACCGGGTGGTGGTGAAGCGCCCGCGCAAGGCGCCGATCATCGAAGGGCCCAAGCCCGGC
TATAGCCTGGAAGGCAAGTCCAGCCGCTACGACATCTATCCGAAGAAGGCCCTGGGCAAGGGCTGA
Translation:
MTDSTAPRLHVQALSADCAEAARRWAERLGLPLAADDEAEFAVQVGEEGLQVLQLGPDSPGPVRVDFVEGAS
AHRRKFGGGSGQMIAKAVGVQPGIRPRVLDATAGLGRDGFVLASLGCEVTLVERQPLIAALLEDGLERAGRD
PDVAPIAARMRLLGGNSADLMRAWDGEAPQVVYLDPMFPHRDKSALVKKEMRLFRPLVGDDLDAPALLQAAL
ALASHRVVVKRPRKAPIIEGPKPGYSLEGKSSRYDIYPKKALGKG*
AnnotationID:3130GeneID:3122
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3680
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAP95565.1| (AE017152) probable SAM-dependent methyltransferase [Haemophilus
           ducreyi 35000HP]
          Length = 251

 Score =  205 bits (521), Expect = 2e-52
 Identities = 112/221 (50%), Positives = 144/221 (65%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:6247
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23389
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31865
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3122_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3122

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5019 PA3680_tr translation of PA3680 261 98.46 98.85 0 1307.0
141057 gb|AAG07068.1|AE004787_8 (AE004787) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 261 98.46 98.85 0 1307.0
141058 gb|AAN67134.1|AE016342_6 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 261 75.47 86.20 3 1018.0
141059 gb|AAO55035.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 288 64.58 76.38 28 960.0
141064 gb|AAQ58141.1| (AE016911) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 275 48.36 61.09 31 572.0
GC ORFID: 46124How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3680Glimmer Score:
Start: 3519124Stop: 3518339
Length: 786
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3680 translation of PA3680Homolog Bit Score 508.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4607 (ORF: BLASTX 378.0), t_PA3680 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGATTCCACCGCTCCTCGCCTGCATGTCCAAGCCCTGTCCGCCGATTGCGCCGAGGCTGCGCGGCGC
TGGGCGGAGCGGCTCGGCCTGCCGTTGGCGGCGGACGACGAGGCGGAGTTCGCCGTGCAGGTCGGCGAGGAG
GGCTTGCAGGTCTTGCAACTGGGGCCGGACTCCCCCGGTCCGGTGCGGGTCGATTTCGTCGAAGGCGCCAGC
GCCCACCGGCGCAAGTTCGGCGGCGGCAGCGGGCAGATGATCGCCAAGGCGGTCGGCGTCCAGCCAGGCATC
CGCCCGCGCGTCCTGGATGCCACGGCCGGCCTGGGCCGGGATGGGTTCGTCCTCGCTAGCCTGGGTTGCGAG
GTAACCCTGGTCGAGCGCCAGCCGCTGATCGCCGCCCTGCTCGAGGATGGCCTGGAGCGCGCCGGGCGCGAT
CCCGACGTGGCGCCGATCGCCGCGCGGATGCGTCTGCTCGGCGGCAACTCGGCGGACCTGATGCGCGCCTGG
GACGGCGAGGCGCCGCAGGTGGTCTACCTCGACCCGATGTTTCCCCATCGCGACAAGAGCGCATTGGTGAAG
AAGGAAATGCGTCTGTTCCGGCCGCTGGTGGGCGACGATCTCGACGCTCCGGCGCTGTTGCAGGCGGCCCTG
GCCCTGGCCAGCCACCGGGTGGTGGTGAAGCGCCCGCGCAAGGCGCCGATCATCGAAGGGCCCAAGCCCGGC
TATAGCCTGGAAGGCAAGTCCAGCCGCTACGACATCTATCCGAAGAAGGCCCTGGGCAAGGGCTGA