ViewGene
Locus Name:
GeneID:
Location:

GeneID:3121
TrivialName: PA14_29470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29470
PAO1 Ortholog Locus:PA2679
Sequence Length:753
Protein Length:250
Start: 2555052
Stop: 2555804
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06067.1|AE004696_1 (AE004696) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 248/250 (99%), Positives = 250/250 (100%)
Sequence:
ATGACGGCACCTTTCAAGGATCATTTCTCCACCGGTTCGGCGAACTACGCAGCACATCGTCCGACCTACCCG
GCGCGGCTGGTCGACGAGCTGGCCGCGCTCTGCCCCGGCACCCGCCTGGCCCTGGACTGCGGCTGCGGCACC
GGACAGCTCACGGTGCTGTTGGCCGAGCGTTTCGAACGGGTGGTCGGTACCGACGCCAGCGCCGCGCAGATC
GACAAGGCGCAGGCTCGCGAGCGGGTCGAGTATCGCGTGTCCCTGGCCGAGGACAGCGGGCTGGCGGCGGCC
AGCGCCGACCTGGTGACGGTCGCCCAGGCCGCCCACTGGCTGGACCTGCCGCGCTTCTACGAGGAAGTCCGG
CGTGTGGCCCGCGCGGACGCCATCCTGGCTCTGGTTACCTATGGCGTATTGCATGTCGACGGACCCATGGAA
CCGCTGGTCCAGCACTTCTACCACCAGGTCGTCGGCCCCTACTGGCCTGCCGAGCGGCGCCACGTGGAGGAG
GGCTATCGCAATCTGCCGTTCCCCTTCGAGGAGCGCCGCCTGCCGGACCTGGCTATCGAGGTGGCCTGGACC
CTGGACGAACTGCTGGGCTATGTCGGTACCTGGTCGGCGGTGAAGGAGGCCGGCAAGGCCCTTGGCCAGGAT
CCGGGCGCCGCGTTCGTCGATGAGCTGCGCGAAGCCTGGGGCGACCCGCAGACGCGCTATCGGGTCAGTTGG
CCGCTGACGGTGCGCGCCGGGGTGATCCGCTGA
Translation:
MTAPFKDHFSTGSANYAAHRPTYPARLVDELAALCPGTRLALDCGCGTGQLTVLLAERFERVVGTDASAAQI
DKAQARERVEYRVSLAEDSGLAAASADLVTVAQAAHWLDLPRFYEEVRRVARADAILALVTYGVLHVDGPME
PLVQHFYHQVVGPYWPAERRHVEEGYRNLPFPFEERRLPDLAIEVAWTLDELLGYVGTWSAVKEAGKALGQD
PGAAFVDELREAWGDPQTRYRVSWPLTVRAGVIR*
AnnotationID:3129GeneID:3121
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 20:08:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2679
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6245




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23387




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36350




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3121_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3121
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5018
                           PA2679_tr
                           translation of PA2679
                           250
                           99.20
                           99.99
                           0
                           1307.0
     

     
     
141052
                           gb|AAG06067.1|AE004696_1
                           (AE004696) hypothetical protein PA2679 [Pseudomonas aeruginosa PAO1]
                           250
                           99.20
                           99.99
                           0
                           1307.0
     

     
     
141053
                           dbj|BAC81977.1|
                           (AB063332) orf2 [Delftia acidovorans]
                           252
                           65.07
                           78.17
                           2
                           884.0
     

     
     
141054
                           dbj|BAB85583.1|
                           (AB049198) ORF2 [Delftia acidovorans]
                           252
                           65.07
                           78.17
                           2
                           884.0
     

     
     
141055
                           gb|AAR36186.1|
                           (AE017217) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           250
                           49.20
                           61.60
                           0
                           635.0
     

     






      

          
GC ORFID: 46123How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2679Glimmer Score: 

          
Start: 2398874Stop: 2398122

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2679 translation of PA2679Homolog Bit Score 508.0

          
Other Homologs:  t_PA2679 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGCACCTTTCAAGGATCATTTCTCCACCGGTTCGGCGAACTACGCAGCACATCGTCCGACCTACCCG 
GCGCGGCTGGTCGACGAGCTGGCCGCGCTCTGCCCCGGCACCCGCCTGGCCCTGGACTGCGGCTGCGGCACC 
GGACAGCTCACGGTGCTGTTGGCCGAGCGTTTCGAACGGGTGGTCGGTACCGACGCCAGCGCCGCGCAGATC 
GACAAGGCGCAGGCTCGCGAGCGGGTCGAGTATCGCGTGTCCCTGGCCGAGGACAGCGGGCTGGCGGCGGCC 
AGCGCCGACCTGGTGACGGTCGCCCAGGCCGCCCACTGGCTGGACCTGCCGCGCTTCTACGAGGAAGTCCGG 
CGTGTGGCCCGCGCGGACGCCATCCTGGCTCTGGTTACCTATGGCGTATTGCATGTCGACGGACCCATGGAA 
CCGCTGGTCCAGCACTTCTACCACCAGGTCGTCGGCCCCTACTGGCCTGCCGAGCGGCGCCACGTGGAGGAG 
GGCTATCGCAATCTGCCGTTCCCCTTCGAGGAGCGCCGCCTGCCGGACCTGGCTATCGAGGTGGCCTGGACC 
CTGGACGAACTGCTGGGCTATGTCGGTACCTGGTCGGCGGTGAAGGAGGCCGGCAAGGCCCTTGGCCAGGAT 
CCGGGCGCCGCGTTCGTCGATGAGCTGCGCGAAGCCTGGGGCGACCCGCAGACGCGCTATCGGGTCAGTTGG 
CCGCTGACGGTGCGCGCCGGGGTGATCCGCTGA