ViewGene
Locus Name:
GeneID:
Location:

GeneID:3120
TrivialName: PA14_34110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34110
PAO1 Ortholog Locus:PA2362
Sequence Length:759
Protein Length:252
Start: 3031802
Stop: 3032560
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05750.1|AE004662_5 (AE004662) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 251/252 (99%), Positives = 252/252 (100%)
Sequence:
ATGCCCGAAGGGAGTGCAGGGCCTTTTTCCCAGGCGTACCAGGAGCAGCCGCTCAGCACGGCATTCCGCCAG
GCCTGGCAGGAATGGCTGGAGGCCTGGGGCGCCCTCGACCGCGACGCCCAGGATGTGCCACGGATGGTCGAG
CGCGCCCTCGAACTGTCCACCCGCATCACCCGGCGTCTGTGGCGCAGCGCCTTCGCCAGCGTCGGCGACGCG
GCGGGCGTGCAGGTCAAGGCGATGGTCTATGCCTTCGTCGCCCTGGTCGACGAGACCCTGGTCTTCAGCGCC
TGGCCGGGGCAGGGCGCCTGGCAGGAAAAACCGCTGGAGTCGCATCTCTACGGCAGTCGCCAGGCGGGCGAA
TACCTGCCGCTGGCGATCAAGCGCCTGCTCGACGAACGCGCCCCGGCCAGTCGCGACCTGGCCAACGTCTAC
CTGCAATGCCTGATCCTCGGCTTCCGCGGTCGCCTGCGCGGGCCGCGCGGCGAGGCGCTGCACGAGAAGTGG
CGGCAGGCGCTGTTCGCCTTCGCCTGGCAGCGCGAGGCGGACGCCGCCGACCTCGGCCGTCGCCTTGAGCAG
CCTGCCGCCGCGCCGCCACGGCGCCTGCCGGTGCGCGCGGCGCTGCCGGACGGTTTCCGCCTGGGCCTGGCG
GTGCTCGGCCTGGTGCTGCTGATGAGCGGCATCGGGCACCTGTTCTGGCGCGACATCCAGCATGAAATGGCG
GCGGTGACCCACCTGGCCGATGCGGAGCAGGCGCCATGA
Translation:
MPEGSAGPFSQAYQEQPLSTAFRQAWQEWLEAWGALDRDAQDVPRMVERALELSTRITRRLWRSAFASVGDA
AGVQVKAMVYAFVALVDETLVFSAWPGQGAWQEKPLESHLYGSRQAGEYLPLAIKRLLDERAPASRDLANVY
LQCLILGFRGRLRGPRGEALHEKWRQALFAFAWQREADAADLGRRLEQPAAAPPRRLPVRAALPDGFRLGLA
VLGLVLLMSGIGHLFWRDIQHEMAAVTHLADAEQAP*
AnnotationID:3128GeneID:3120
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2362
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6243




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23385




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3120
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5017
                           PA2362_tr
                           translation of PA2362
                           252
                           99.60
                           99.99
                           0
                           1309.0
     

     
     
141051
                           gb|AAG05750.1|AE004662_5
                           (AE004662) hypothetical protein PA2362 [Pseudomonas aeruginosa PAO1]
                           252
                           99.60
                           99.99
                           0
                           1309.0
     

     






      

          
GC ORFID: 46122How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2362Glimmer Score: 

          
Start: 1922114Stop: 1921356

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2362 translation of PA2362Homolog Bit Score 508.0

          
Other Homologs:  t_PA2362 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGAAGGGAGTGCAGGGCCTTTTTCCCAGGCGTACCAGGAGCAGCCGCTCAGCACGGCATTCCGCCAG 
GCCTGGCAGGAATGGCTGGAGGCCTGGGGCGCCCTCGACCGCGACGCCCAGGATGTGCCACGGATGGTCGAG 
CGCGCCCTCGAACTGTCCACCCGCATCACCCGGCGTCTGTGGCGCAGCGCCTTCGCCAGCGTCGGCGACGCG 
GCGGGCGTGCAGGTCAAGGCGATGGTCTATGCCTTCGTCGCCCTGGTCGACGAGACCCTGGTCTTCAGCGCC 
TGGCCGGGGCAGGGCGCCTGGCAGGAAAAACCGCTGGAGTCGCATCTCTACGGCAGTCGCCAGGCGGGCGAA 
TACCTGCCGCTGGCGATCAAGCGCCTGCTCGACGAACGCGCCCCGGCCAGTCGCGACCTGGCCAACGTCTAC 
CTGCAATGCCTGATCCTCGGCTTCCGCGGTCGCCTGCGCGGGCCGCGCGGCGAGGCGCTGCACGAGAAGTGG 
CGGCAGGCGCTGTTCGCCTTCGCCTGGCAGCGCGAGGCGGACGCCGCCGACCTCGGCCGTCGCCTTGAGCAG 
CCTGCCGCCGCGCCGCCACGGCGCCTGCCGGTGCGCGCGGCGCTGCCGGACGGTTTCCGCCTGGGCCTGGCG 
GTGCTCGGCCTGGTGCTGCTGATGAGCGGCATCGGGCACCTGTTCTGGCGCGACATCCAGCATGAAATGGCG 
GCGGTGACCCACCTGGCCGATGCGGAGCAGGCGCCATGA