ViewGene
Locus Name:
GeneID:
Location:

GeneID:3119
TrivialName: PA14_35360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35360
PAO1 Ortholog Locus:PA2260
Sequence Length:783
Protein Length:260
Start: 3144025
Stop: 3143243
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05648.1|AE004652_1 (AE004652) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 253/260 (97%), Positives = 255/260 (98%)
Sequence:
ATGTCCCTTCACCCTGTCTCCATCAGTCTTTCCAGCTACGGCGCGGACCTCGTTCGCAGTCGCGGCCAGGCC
AGCTTCCTGCCCCTGCTGGGGATGGCCGGCGCGCAGCGCGTGGAACTGCGCGAGGAACTCTTCGCCGGCCCG
CCGGATACCGAAGCGCTGACCGCCGCCATCCAGTTGCAGGGGCTGGAATGCGTGTTCTCCTCGCCCCTCGAG
CTGTGGCGCGAAGACGGCCAGTTGAACCCCGAGCTGGAGCCGACCCTGCGCCGCGCCGAAGCCTGCGGGGCC
GGCTGGCTCAAGGTCTCGCTCGGTCATCTGCCGGAACAGCCCGACCTCGCCGCCCTCGCCCGGCGCCTGGCG
CGCCACGGCTTGCAACTGCTGGTGGAGAACGACCAGACGCCCCAGGGCGGCCGGATCGATGTGCTGGAACGC
TTCTTCCGCCTCGCCGAGCGCCAGCAACTGGACCTGGCGATGACCTTCGACATCGGCAACTGGCGCTGGCAG
GAGCAGGCGGTGGACGATGCCGCCCTGCGCCTGGGCCGCTACGTCGGCTACGTGCACTGCAAGGCGGTGATC
CGCAACCGCGACGGCAAGCTGGTCGCGGTACCGCCGTCGGCCGCCGACCTGCAGTACTGGCAGCGCCTGCTG
CAGCATTTCCCGGAAGGCGTGGCGCGGGCCATCGAATACCCGCTGCAGGGCGACGACCTGCTCAGTCTCAGC
CGCCGGCACATCGCCGCCCTCGCCCGCCTCGGCCATCCCCAGGAGGAACGCCAGCATGGCTGA
Translation:
MSLHPVSISLSSYGADLVRSRGQASFLPLLGMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLE
LWREDGQLNPELEPTLRRAEACGAGWLKVSLGHLPEQPDLAALARRLARHGLQLLVENDQTPQGGRIDVLER
FFRLAERQQLDLAMTFDIGNWRWQEQAVDDAALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLL
QHFPEGVARAIEYPLQGDDLLSLSRRHIAALARLGHPQEERQHG*
AnnotationID:3127GeneID:3119
AnnotatorUID: diggins
Modification Date/Time: 2004-06-10 21:09:52
Gene Name:
Confidence Code:3
GeneProduct:putative putative epimerase
Cell Localization:()
Synonyms:kguE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68983.1|AE016530_6 (AE016786) epimerase KguE, putative [Pseudomonas putida KT2440]
          Length = 259

 Score =  270 bits (690), Expect = 6e-72
 Identities = 145/255 (56%), Positives = 169/255 (66%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6241




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23383




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32519




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3119_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3119
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5016
                           PA2260_tr
                           translation of PA2260
                           260
                           97.30
                           98.07
                           0
                           1307.0
     

     
     
141048
                           gb|AAG05648.1|AE004652_1
                           (AE004652) hypothetical protein PA2260 [Pseudomonas aeruginosa PAO1]
                           260
                           97.30
                           98.07
                           0
                           1307.0
     

     
     
141049
                           gb|AAK37647.1|
                           (AF012100) KguE [Pseudomonas aeruginosa]
                           260
                           97.30
                           98.07
                           0
                           1307.0
     

     
     
141050
                           gb|AAN68983.1|AE016530_6
                           (AE016786) epimerase KguE, putative [Pseudomonas putida KT2440]
                           260
                           56.15
                           65.38
                           1
                           686.0
     

     






      

          
GC ORFID: 46121How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2260Glimmer Score: 

          
Start: 1809891Stop: 1810673

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2260 translation of PA2260Homolog Bit Score 508.0

          
Other Homologs:  t_PA2260 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTTCACCCTGTCTCCATCAGTCTTTCCAGCTACGGCGCGGACCTCGTTCGCAGTCGCGGCCAGGCC 
AGCTTCCTGCCCCTGCTGGGGATGGCCGGCGCGCAGCGCGTGGAACTGCGCGAGGAACTCTTCGCCGGCCCG 
CCGGATACCGAAGCGCTGACCGCCGCCATCCAGTTGCAGGGGCTGGAATGCGTGTTCTCCTCGCCCCTCGAG 
CTGTGGCGCGAAGACGGCCAGTTGAACCCCGAGCTGGAGCCGACCCTGCGCCGCGCCGAAGCCTGCGGGGCC 
GGCTGGCTCAAGGTCTCGCTCGGTCATCTGCCGGAACAGCCCGACCTCGCCGCCCTCGCCCGGCGCCTGGCG 
CGCCACGGCTTGCAACTGCTGGTGGAGAACGACCAGACGCCCCAGGGCGGCCGGATCGATGTGCTGGAACGC 
TTCTTCCGCCTCGCCGAGCGCCAGCAACTGGACCTGGCGATGACCTTCGACATCGGCAACTGGCGCTGGCAG 
GAGCAGGCGGTGGACGATGCCGCCCTGCGCCTGGGCCGCTACGTCGGCTACGTGCACTGCAAGGCGGTGATC 
CGCAACCGCGACGGCAAGCTGGTCGCGGTACCGCCGTCGGCCGCCGACCTGCAGTACTGGCAGCGCCTGCTG 
CAGCATTTCCCGGAAGGCGTGGCGCGGGCCATCGAATACCCGCTGCAGGGCGACGACCTGCTCAGTCTCAGC 
CGCCGGCACATCGCCGCCCTCGCCCGCCTCGGCCATCCCCAGGAGGAACGCCAGCATGGCTGA