ViewGene
Locus Name:
GeneID:
Location:

GeneID:3118
TrivialName: PA14_36540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36540
PAO1 Ortholog Locus:PA2168
Sequence Length:777
Protein Length:258
Start: 3251351
Stop: 3250575
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05556.1|AE004644_3 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/258 (98%), Positives = 256/258 (99%)
Sequence:
ATGACGGCGAACAGCGAACGCATCCGCATCGGGGTCGGCGACGACCGGATCGAAGGCACCTTCCTCAGCCCC
CGGGCGAAGGTCCCCGGCGTGCTCTTCGTGCACGGCTGGGGCGGCAGCCAGCAGCGCGACCTGAAGCGCGCC
CAGGGCATCGCCGGGCTCGGCTGCGTGTGCCTGACCTTCGACCTGCGCGGCCACGGCGCGGAAAGCGGGCGC
CAGGCGCTGGTGACGCGCGAGGACAACCTGCAGGACCTGCTCGCCGCCTACGACCGGCTGGTGGCCCACCCG
GCCATCGACAGCCAGGCGATCGCGGTGGTCGGCACCAGCTATGGCGGCTACCTGGCGGCGATCCTCAGCCAG
TTGCGCGCGGTGCGCTGGCTGGCCTTGCGGGTACCGGCGATCTACCGCGACGAGGACTGGCTGACGCCCAAG
CTGCTGCTCGACCGCGAGGACCTCATCGAGTACCGCGGCAGCCTGATCCCGGCCGCCAGCAACCGAGCCCTG
CAGGCCTGCGCGGGATTCCGCGGCGATGTGCTGCTGGTGGAGTCGGAGTTCGACAGCTATGTGCCGCACTCG
ACCATCATGAGTTTCCGCGCCGCCTTCCAGCAGACCCATTCGCTGACCCACCGGATCATCGACCACGCCGAC
CATGCGCTCAGCAGCGAGGCGGCGCAGGACGCCTATACCTCGATCCTGGTGGACTGGATCACCGAGATGGTG
GTCGGCGAACGTCTCAGCATCACCCCGGCCTACGCCACCATCCATCCGGCTTTCTGA
Translation:
MTANSERIRIGVGDDRIEGTFLSPRAKVPGVLFVHGWGGSQQRDLKRAQGIAGLGCVCLTFDLRGHGAESGR
QALVTREDNLQDLLAAYDRLVAHPAIDSQAIAVVGTSYGGYLAAILSQLRAVRWLALRVPAIYRDEDWLTPK
LLLDREDLIEYRGSLIPAASNRALQACAGFRGDVLLVESEFDSYVPHSTIMSFRAAFQQTHSLTHRIIDHAD
HALSSEAAQDAYTSILVDWITEMVVGERLSITPAYATIHPAF*
AnnotationID:3126GeneID:3118
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:51
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2168
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative peptidase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67849.1|AE016416_2 (AE016782) prolyl oligopeptidase family protein [Pseudomonas putida
           KT2440]
          Length = 270

 Score =  327 bits (837), Expect = 5e-89
 Identities = 159/252 (63%), Positives = 193/252 (76%)

>gb|AAM38803.1| (AE012046) hydrolase; peptidase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 289

 Score =  254 bits (648), Expect = 4e-67
 Identities = 130/248 (52%), Positives = 169/248 (68%), Gaps = 2/248 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6239




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23381




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32563




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3118_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3118
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5015
                           PA2168_tr
                           translation of PA2168
                           258
                           98.83
                           99.22
                           0
                           1308.0
     

     
     
141041
                           gb|AAG05556.1|AE004644_3
                           (AE004644) hypothetical protein PA2168 [Pseudomonas aeruginosa PAO1]
                           258
                           98.83
                           99.22
                           0
                           1308.0
     

     
     
141042
                           emb|CAE37963.1|
                           (BX640431) conserved hypothetical protein [Bordetella parapertussis]
                           259
                           62.54
                           76.83
                           9
                           861.0
     

     
     
141044
                           emb|CAE33330.1|
                           (BX640445) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           259
                           59.84
                           74.13
                           20
                           834.0
     

     
     
141045
                           emb|CAE41627.1|
                           (BX640415) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           259
                           59.45
                           74.13
                           20
                           831.0
     

     






      

          
GC ORFID: 46120How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2168Glimmer Score: 

          
Start: 1702564Stop: 1703340

          
Length: 777


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2168 translation of PA2168Homolog Bit Score 508.0

          
Other Homologs:  t_PA2168 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGCGAACAGCGAACGCATCCGCATCGGGGTCGGCGACGACCGGATCGAAGGCACCTTCCTCAGCCCC 
CGGGCGAAGGTCCCCGGCGTGCTCTTCGTGCACGGCTGGGGCGGCAGCCAGCAGCGCGACCTGAAGCGCGCC 
CAGGGCATCGCCGGGCTCGGCTGCGTGTGCCTGACCTTCGACCTGCGCGGCCACGGCGCGGAAAGCGGGCGC 
CAGGCGCTGGTGACGCGCGAGGACAACCTGCAGGACCTGCTCGCCGCCTACGACCGGCTGGTGGCCCACCCG 
GCCATCGACAGCCAGGCGATCGCGGTGGTCGGCACCAGCTATGGCGGCTACCTGGCGGCGATCCTCAGCCAG 
TTGCGCGCGGTGCGCTGGCTGGCCTTGCGGGTACCGGCGATCTACCGCGACGAGGACTGGCTGACGCCCAAG 
CTGCTGCTCGACCGCGAGGACCTCATCGAGTACCGCGGCAGCCTGATCCCGGCCGCCAGCAACCGAGCCCTG 
CAGGCCTGCGCGGGATTCCGCGGCGATGTGCTGCTGGTGGAGTCGGAGTTCGACAGCTATGTGCCGCACTCG 
ACCATCATGAGTTTCCGCGCCGCCTTCCAGCAGACCCATTCGCTGACCCACCGGATCATCGACCACGCCGAC 
CATGCGCTCAGCAGCGAGGCGGCGCAGGACGCCTATACCTCGATCCTGGTGGACTGGATCACCGAGATGGTG 
GTCGGCGAACGTCTCAGCATCACCCCGGCCTACGCCACCATCCATCCGGCTTTCTGA