ViewGene
Locus Name:
GeneID:
Location:

GeneID:3117
TrivialName: PA14_41780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41780
PAO1 Ortholog Locus:PA1762
Sequence Length:762
Protein Length:253
Start: 3729678
Stop: 3728917
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05151.1|AE004602_2 (AE004602) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 253/253 (100%), Positives = 253/253 (100%)
Sequence:
ATGTTCGAGATTTTGCTGGGAAGTCTGATCGGACTGTTCGGGTTCACCCAGACGGTCGATACCAAGCCGCAA
CCGCAGGGCACGGTCAACCTCAGCCAGCCTCTGACCCCCAATGGACCCTACCGCGAATCGGTGCAACTGGAG
CCGATGAGCCAGTTGCAGTTCCGCAACGTCATCCGCCAGGCCTATGACTACAGCTGCGGCTCGGCGGCGCTT
ACCACGCTGCTGGACTACTACCTCGGGCGCAACCTCGAGGAACGCCAGGTCATGGAAGGGCTGCTGCGCTAT
GGCGAGGCCGATAAGATCGTGCAGCGCCGCGGTTTCTCGCTGCTCGACATGAAGCGCTACGCCGCTGCGCTG
GGCTACAAGAGCGGTGGTTTTCGCGCCGAGTTCAGCGACCTGGACGCTCTCGAGCATCCGGCGCTGGTCCCC
ATCCACTATGCCGGCTTCAAGCATTTCGTGGTGGTGCGCGATGTCTACAACGATCACGTCTTCGTCGCCGAT
CCGGCCTTGGGCAACATCAGCTTCACCCGGACGCGCTTCGAGGAAATCTGGGACCAGAACGTCCTGTTCGTG
ATCTTCCCGAGTGGGCAGGAGCCCCGCAACGCGCTGGCGCTGAACGATCGCGACATGCGCCTGGTGGACGAC
CGCACCGTCAGCCTGCTGGCGTTCCGCGAGTTTCCGCAGATCAACAAGATCACTGAAAACCAGGTCCGTGAG
CTGGGCACTGGTGGCGACGTCATACACCTGCGCACCAAGTAG
Translation:
MFEILLGSLIGLFGFTQTVDTKPQPQGTVNLSQPLTPNGPYRESVQLEPMSQLQFRNVIRQAYDYSCGSAAL
TTLLDYYLGRNLEERQVMEGLLRYGEADKIVQRRGFSLLDMKRYAAALGYKSGGFRAEFSDLDALEHPALVP
IHYAGFKHFVVVRDVYNDHVFVADPALGNISFTRTRFEEIWDQNVLFVIFPSGQEPRNALALNDRDMRLVDD
RTVSLLAFREFPQINKITENQVRELGTGGDVIHLRTK*
AnnotationID:3125GeneID:3117
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 07:07:05
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase
Cell Localization:()
Synonyms:PA1762
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3271,pfam03412
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3271, COG3271, Predicted double-glycine peptidase
CD-Length = 201 residues, 100.0% aligned
Score =  184 bits (467), Expect = 1e-47
Identities = 69/229 (30%), Positives = 99/229 (43%), Gaps = 28/229 (12%)

pfam03412, Peptidase_C39, Peptidase C39 family. 
CD-Length = 131 residues,  96.2% aligned
Score = 88.7 bits (220), Expect = 6e-19
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 10/135 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6237




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23379




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37115




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3117_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3117
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5014
                           PA1762_tr
                           translation of PA1762
                           253
                           99.99
                           99.99
                           0
                           1308.0
     

     
     
141039
                           gb|AAG05151.1|AE004602_2
                           (AE004602) hypothetical protein PA1762 [Pseudomonas aeruginosa PAO1]
                           253
                           99.99
                           99.99
                           0
                           1308.0
     

     
     
141040
                           gb|AAQ58362.1|
                           (AE016912) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           278
                           30.21
                           45.32
                           69
                           305.0
     

     






      

          
GC ORFID: 46119How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1762Glimmer Score: 

          
Start: 1224231Stop: 1224992

          
Length: 762


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1762 translation of PA1762Homolog Bit Score 508.0

          
Other Homologs:  t_PA1762 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGAGATTTTGCTGGGAAGTCTGATCGGACTGTTCGGGTTCACCCAGACGGTCGATACCAAGCCGCAA 
CCGCAGGGCACGGTCAACCTCAGCCAGCCTCTGACCCCCAATGGACCCTACCGCGAATCGGTGCAACTGGAG 
CCGATGAGCCAGTTGCAGTTCCGCAACGTCATCCGCCAGGCCTATGACTACAGCTGCGGCTCGGCGGCGCTT 
ACCACGCTGCTGGACTACTACCTCGGGCGCAACCTCGAGGAACGCCAGGTCATGGAAGGGCTGCTGCGCTAT 
GGCGAGGCCGATAAGATCGTGCAGCGCCGCGGTTTCTCGCTGCTCGACATGAAGCGCTACGCCGCTGCGCTG 
GGCTACAAGAGCGGTGGTTTTCGCGCCGAGTTCAGCGACCTGGACGCTCTCGAGCATCCGGCGCTGGTCCCC 
ATCCACTATGCCGGCTTCAAGCATTTCGTGGTGGTGCGCGATGTCTACAACGATCACGTCTTCGTCGCCGAT 
CCGGCCTTGGGCAACATCAGCTTCACCCGGACGCGCTTCGAGGAAATCTGGGACCAGAACGTCCTGTTCGTG 
ATCTTCCCGAGTGGGCAGGAGCCCCGCAACGCGCTGGCGCTGAACGATCGCGACATGCGCCTGGTGGACGAC 
CGCACCGTCAGCCTGCTGGCGTTCCGCGAGTTTCCGCAGATCAACAAGATCACTGAAAACCAGGTCCGTGAG 
CTGGGCACTGGTGGCGACGTCATACACCTGCGCACCAAGTAG