ViewGene
Locus Name:
GeneID:
Location:

GeneID:3116
TrivialName: PA14_41590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41590
PAO1 Ortholog Locus:PA1775
Sequence Length:825
Protein Length:274
Start: 3715094
Stop: 3714270
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05164.1|AE004603_4 (AE004603) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 274/274 (100%), Positives = 274/274 (100%)
Sequence:
ATGCAATTCGATATCTGGACCCAGAGCTTGCTGACCGCGATGAACACCCTGTGGGGCAAGCTGGCAGGCTTC
ATTCCCAACCTGCTCGGCGCCCTGGTGGTCGTTCTGCTCGGCTTCGTCATCGCCAAGCTGCTCGATGCGCTG
CTTTCCAAGCTGCTGGCCAAGCTGGGCCTGGACCGGCTGATGGGTGGCACCGGCCTGACCAAGCTGCTGGCC
CGGGTCGGCATCCAGGTTCCGGTCTCGACGCTGGTCGGCAAGATCGTCTACTGGTTCGTGCTGCTCGTCTTC
CTCGTATCCGCCGCCGAGTCGCTCGGCCTGCAGCGGGTATCCGCCACGCTGGACGTCCTCGCCCTGTACCTG
CCCAAGGTGTTCGGCGCGGCCCTGGTGCTGATCGTCGGCGTGCTCCTGGCGCAACTGGTGAACAGCGTCGTG
CGCGGCGCGGCGGACGGCGTTGGCCTCGAATACGCGAACGGCCTGGGGCGGATCGCCCAGTGGCTGGTCATC
ATCATCAGCATCTCGGTGGCGGTGGGGCAGCTCGAGGTCAAGACCGACCTGCTCAACTACATCATCGCCATC
GTCCTGATCACCGTCGGCCTGGCCGCTGCGCTGGCCCTGGGCCTGGGCAGCCGCGAGGTCGCCGGGCAGATC
ATTGCAGGAATCTACGTCCGCGAGCTGTATCAGGTCGGACAACAGGTGAAAGTGGGTGACGTTGAAGGCACT
ATTGAAGAGATAGGTACGGTCAAGACCATCCTGCTGACGGAAGAGGGAGAGCTTGTGTCGCTGGCCAACCGT
CTACTGCTCGATCAGCGAGTTACCAGCCGCTGA
Translation:
MQFDIWTQSLLTAMNTLWGKLAGFIPNLLGALVVVLLGFVIAKLLDALLSKLLAKLGLDRLMGGTGLTKLLA
RVGIQVPVSTLVGKIVYWFVLLVFLVSAAESLGLQRVSATLDVLALYLPKVFGAALVLIVGVLLAQLVNSVV
RGAADGVGLEYANGLGRIAQWLVIIISISVAVGQLEVKTDLLNYIIAIVLITVGLAAALALGLGSREVAGQI
IAGIYVRELYQVGQQVKVGDVEGTIEEIGTVKTILLTEEGELVSLANRLLLDQRVTSR*
AnnotationID:3124GeneID:3116
AnnotatorUID: diggins
Modification Date/Time: 2005-01-16 08:08:56
Gene Name:
Confidence Code:3
GeneProduct:putative cytoplasmic membrane protein
Cell Localization:()
Synonyms:cmpX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55811.1| (AE016864) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 274

 Score =  433 bits (1113), Expect = e-121
 Identities = 222/274 (81%), Positives = 252/274 (91%)

>gb|AAD45975.1|AF115334_2 (AF115334) CmpX [Pseudomonas fluorescens]
          Length = 274

 Score =  432 bits (1112), Expect = e-121
 Identities = 221/274 (80%), Positives = 254/274 (92%)

>gb|AAN67701.1|AE016401_4 (AE016781) cmpX protein [Pseudomonas putida KT2440]
          Length = 274

 Score =  427 bits (1098), Expect = e-119
 Identities = 220/274 (80%), Positives = 249/274 (90%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6235




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23377




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37148




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3116_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3116
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5013
                           PA1775_tr
                           translation of PA1775
                           274
                           99.99
                           99.99
                           0
                           1309.0
     

     
     
141034
                           gb|AAG05164.1|AE004603_4
                           (AE004603) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           274
                           99.99
                           99.99
                           0
                           1309.0
     

     
     
141035
                           gb|AAD11566.1|
                           (AF027290) putative cytoplasmic membrane protein [Pseudomonas aeruginosa]
                           274
                           99.99
                           99.99
                           0
                           1309.0
     

     
     
141036
                           gb|AAO55811.1|
                           (AE016864) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           274
                           81.02
                           91.97
                           0
                           1113.0
     

     
     
141037
                           gb|AAD45975.1|AF115334_2
                           (AF115334) CmpX [Pseudomonas fluorescens]
                           274
                           80.65
                           92.70
                           0
                           1112.0
     

     






      

          
GC ORFID: 46118How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1775Glimmer Score: 

          
Start: 1238815Stop: 1239639

          
Length: 825


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1775 translation of PA1775Homolog Bit Score 508.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1071 (ORF: BLASTX 432.0), t_PA1775 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATTCGATATCTGGACCCAGAGCTTGCTGACCGCGATGAACACCCTGTGGGGCAAGCTGGCAGGCTTC 
ATTCCCAACCTGCTCGGCGCCCTGGTGGTCGTTCTGCTCGGCTTCGTCATCGCCAAGCTGCTCGATGCGCTG 
CTTTCCAAGCTGCTGGCCAAGCTGGGCCTGGACCGGCTGATGGGTGGCACCGGCCTGACCAAGCTGCTGGCC 
CGGGTCGGCATCCAGGTTCCGGTCTCGACGCTGGTCGGCAAGATCGTCTACTGGTTCGTGCTGCTCGTCTTC 
CTCGTATCCGCCGCCGAGTCGCTCGGCCTGCAGCGGGTATCCGCCACGCTGGACGTCCTCGCCCTGTACCTG 
CCCAAGGTGTTCGGCGCGGCCCTGGTGCTGATCGTCGGCGTGCTCCTGGCGCAACTGGTGAACAGCGTCGTG 
CGCGGCGCGGCGGACGGCGTTGGCCTCGAATACGCGAACGGCCTGGGGCGGATCGCCCAGTGGCTGGTCATC 
ATCATCAGCATCTCGGTGGCGGTGGGGCAGCTCGAGGTCAAGACCGACCTGCTCAACTACATCATCGCCATC 
GTCCTGATCACCGTCGGCCTGGCCGCTGCGCTGGCCCTGGGCCTGGGCAGCCGCGAGGTCGCCGGGCAGATC 
ATTGCAGGAATCTACGTCCGCGAGCTGTATCAGGTCGGACAACAGGTGAAAGTGGGTGACGTTGAAGGCACT 
ATTGAAGAGATAGGTACGGTCAAGACCATCCTGCTGACGGAAGAGGGAGAGCTTGTGTCGCTGGCCAACCGT 
CTACTGCTCGATCAGCGAGTTACCAGCCGCTGA