ViewGene
Locus Name:
GeneID:
Location:

GeneID:3114
TrivialName: PA14_07960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07960
PAO1 Ortholog Locus:PA0611
Sequence Length:771
Protein Length:256
Start: 686651
Stop: 685881
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04000.1|AE004497_7 (AE004497) transcriptional regulator PrtR [Pseudomonas aeruginosa PAO1]
Identities = 255/256 (99%), Positives = 255/256 (99%)
Sequence:
ATGGACAAGAGCACCCAGATCCCGCCCGACAGCTTCGCCGCTCGCCTCAAGCAGGCCATGGCGATGCGCAAC
CTGAAGCAGGAAACCCTCGCCGAAGCGGCAGGGGTTTCGCAGAACACCATTCACAAGCTGACCTCGGGCAAG
GCCCAGAGCACCCGCAAGCTGATCGAGATCGCGGCGGCCCTGGGCGTCTCGCCGGTCTGGCTGCAGACCGGC
GAAGGCACTCCAGCCGCGCGCAGTGCCGTGTCCGTGGCCGATGGCAGCCCATTGGTGCTGGAACCGCTGCAT
CCGTGGGACAGCGACACACCGCTGGACGAAGACGAAGTGGAACTGCCGCTGTACAAGGAAGTGGAGATGTCC
GCCGGCGCCGGACGCACTGCGGTACGCGAGATAGAGGGGCGCAAGCTGCGTTTTTCCTATGCCACGCTGCGT
GCCTCGGGCGTCGATCCGTCGGCGGCGATCTGCGCCCAACTCACCGGCAACAGCATGGAACCGCTGATCATG
GATGGCTCCACCATCGGCGTGGACACCGCCACCACCCATATCACCGATGGCGAGATCTACGCCCTCGAACAT
GACGGCATGCTGCGGGTGAAGTTCGTCTATCGCCTGCCCGGCGGCGGCATTCGCCTGCGCAGCTTCAACCGC
GAGGAATATCCGGACGAGGAGTACTCGCCGGAGGACATGCGCAGCCGCCAGATCAGCATGATCGGTTGGGTC
TTCTGGTGGTCCACCGTACGCCACCGGCGCGGCCCGTCCCTGGTGCGGTGA
Translation:
MDKSTQIPPDSFAARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQSTRKLIEIAAALGVSPVWLQTG
EGTPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLR
ASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNR
EEYPDEEYSPEDMRSRQISMIGWVFWWSTVRHRRGPSLVR*
AnnotationID:3122GeneID:3114
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 13:01:34
Gene Name:prtR
Confidence Code:1
GeneProduct:transcriptional regulator PrtR
Cell Localization:()
Synonyms:PA0611
Cell Localization Confidence Code:5
MolecularFunction:negative regulator of pyocin genes
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2932
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
99.6% identical to prtR (PA0611) of PAO1, and 43.35% identical to PA0906 of PAO1 and GeneID=3337 of PA14.






 
Structural Features:
COG2932, Predicted transcriptional regulator. Score: 146, 3e-36
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Score: 53.2, 3e-08
smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins. Score: 53.6, 2e-08






   
Genomic Context:






   
Comment:


















    ReferenceID:6231




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23373




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32011




  
Author/Investigator(s):
        Matsui H, Sano Y, Ishihara H, Shinomiya T.






  
Title:
        Regulation of pyocin genes in Pseudomonas aeruginosa by positive (prtN) and negative (prtR) regulatory genes.





  
PubMed:
        93186690


MedLine:
        




    
Source:
J Bacteriol. 1993 Mar;175(5):1257-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3114
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5010
                           PA0611_tr
                           translation of PA0611
                           256
                           99.60
                           99.60
                           0
                           1311.0
     

     
     
141028
                           dbj|BAA83146.1|
                           (AB030825) PRF4 [Pseudomonas aeruginosa]
                           256
                           99.60
                           99.60
                           0
                           1311.0
     

     
     
141027
                           dbj|BAA83132.1|
                           (AB030826) PRF4 [Pseudomonas aeruginosa]
                           256
                           99.60
                           99.60
                           0
                           1311.0
     

     
     
141026
                           dbj|BAA02198.1|
                           (D12706) negative regulator of pyocin genes [Pseudomonas aeruginosa]
                           256
                           99.60
                           99.60
                           0
                           1311.0
     

     
     
141025
                           gb|AAG04000.1|AE004497_7
                           (AE004497) transcriptional regulator PrtR [Pseudomonas aeruginosa PAO1]
                           256
                           99.60
                           99.60
                           0
                           1311.0
     

     






      

          
GC ORFID: 46116How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0611Glimmer Score: 

          
Start: 6487994Stop: 6487224

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0611 translation of PA0611Homolog Bit Score 509.0

          
Other Homologs:  t_PA0906 (ORF: BLASTX 232.0), psyr_15may02_Scaffold2_revised_gene3630 (ORF: BLASTX 167.0), t_PA0611 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAGAGCACCCAGATCCCGCCCGACAGCTTCGCCGCTCGCCTCAAGCAGGCCATGGCGATGCGCAAC 
CTGAAGCAGGAAACCCTCGCCGAAGCGGCAGGGGTTTCGCAGAACACCATTCACAAGCTGACCTCGGGCAAG 
GCCCAGAGCACCCGCAAGCTGATCGAGATCGCGGCGGCCCTGGGCGTCTCGCCGGTCTGGCTGCAGACCGGC 
GAAGGCACTCCAGCCGCGCGCAGTGCCGTGTCCGTGGCCGATGGCAGCCCATTGGTGCTGGAACCGCTGCAT 
CCGTGGGACAGCGACACACCGCTGGACGAAGACGAAGTGGAACTGCCGCTGTACAAGGAAGTGGAGATGTCC 
GCCGGCGCCGGACGCACTGCGGTACGCGAGATAGAGGGGCGCAAGCTGCGTTTTTCCTATGCCACGCTGCGT 
GCCTCGGGCGTCGATCCGTCGGCGGCGATCTGCGCCCAACTCACCGGCAACAGCATGGAACCGCTGATCATG 
GATGGCTCCACCATCGGCGTGGACACCGCCACCACCCATATCACCGATGGCGAGATCTACGCCCTCGAACAT 
GACGGCATGCTGCGGGTGAAGTTCGTCTATCGCCTGCCCGGCGGCGGCATTCGCCTGCGCAGCTTCAACCGC 
GAGGAATATCCGGACGAGGAGTACTCGCCGGAGGACATGCGCAGCCGCCAGATCAGCATGATCGGTTGGGTC 
TTCTGGTGGTCCACCGTACGCCACCGGCGCGGCCCGTCCCTGGTGCGGTGA