ViewGene
Locus Name:
GeneID:
Location:

GeneID:3112
TrivialName: PA14_65720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65720
PAO1 Ortholog Locus:PA4972
Sequence Length:747
Protein Length:248
Start: 5852353
Stop: 5853099
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08357.1|AE004910_4 (AE004910) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 247/248 (99%), Positives = 247/248 (99%)
Sequence:
ATGCGCCTTCTGAAATTCGCCGCCCTCGGCAGCCTGGTCGTTCTGCTGAGCGCCTGCCAGAGCTTCTTCAAG
CCCGGCCTCGACGACCCGCTGCCCACCGAGCGCCTCGCCAGCGAGCACCTGAAGCCCGGCTGCCAGGGCGAA
CAGTGCCCCTTGGTAAACATCGACACCCTGAAGTTCCCCGACGAACCGCAGCTGGACCCGATCGTCGAGCGC
GCCCTGCTGGAAATGACCCGGGAAAACAACGAAACGCCCCTGCCGGCATCGCTGGCGGCCTACGAGCGGCAG
TTCCTGGACAGCGCCGAGCCGGGCTGGAGCAGCTACCTGCAAGCCAAGGTGCGCGAACAACATGACGGTCTG
GTGATCATCGAGCTTTCCAGCTACCTGTTCACCGGCGGCGCCCACGGCATGCCCGGTCGCGGCTTCATCAAC
TACGACCGCAGGCAGCACAAGGTGCTGAGCCTGCAGGACATGCTGGTTCCCGGCCAGGAAGAAGCCTTCTGG
AAACAGGCCGAGCTGGCACACAAGGCCTGGCTGCTGGCCAACAAGCTCGACCAGGACGCCGATTTCCAGAAG
ACCTGGCCGTTCCAGCGCACCCCGCACGTGGCATTGACCTTCGGCGCGGTGACGCTGAAGTACGACGCCTAC
TCCATCGCGCCGTATTCCTATGCCCACCCCGAACTGAAGATCCCGTATCCGCGCCTGAACGGCATCGTCAAG
CCGAACCTGTTCCCCGGCCGCGGCTGA
Translation:
MRLLKFAALGSLVVLLSACQSFFKPGLDDPLPTERLASEHLKPGCQGEQCPLVNIDTLKFPDEPQLDPIVER
ALLEMTRENNETPLPASLAAYERQFLDSAEPGWSSYLQAKVREQHDGLVIIELSSYLFTGGAHGMPGRGFIN
YDRRQHKVLSLQDMLVPGQEEAFWKQAELAHKAWLLANKLDQDADFQKTWPFQRTPHVALTFGAVTLKYDAY
SIAPYSYAHPELKIPYPRLNGIVKPNLFPGRG*
AnnotationID:3120GeneID:3112
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 06:06:48
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4972
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70487.1|AE016690_3 (AE016792) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 248

 Score =  328 bits (841), Expect = 2e-89
 Identities = 156/248 (62%), Positives = 192/248 (77%)

>gb|AAO58402.1| (AE016874) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 248

 Score =  320 bits (821), Expect = 4e-87
 Identities = 150/248 (60%), Positives = 190/248 (76%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6227




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23369




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3112
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5008
                           PA4972_tr
                           translation of PA4972
                           248
                           99.59
                           99.59
                           0
                           1311.0
     

     
     
140989
                           gb|AAG08357.1|AE004910_4
                           (AE004910) hypothetical protein PA4972 [Pseudomonas aeruginosa PAO1]
                           248
                           99.59
                           99.59
                           0
                           1311.0
     

     
     
140990
                           gb|AAP70393.1|
                           (AY236225) Uvs096 [uncultured bacterium]
                           248
                           65.32
                           78.22
                           0
                           870.0
     

     
     
140991
                           gb|AAN70487.1|AE016690_3
                           (AE016792) lipoprotein, putative [Pseudomonas putida KT2440]
                           248
                           62.90
                           77.41
                           0
                           841.0
     

     
     
140992
                           gb|AAO58402.1|
                           (AE016874) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           248
                           60.48
                           76.61
                           0
                           821.0
     

     






      

          
GC ORFID: 46114How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4972Glimmer Score: 

          
Start: 5116035Stop: 5116781

          
Length: 747


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4972 translation of PA4972Homolog Bit Score 509.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3672 (ORF: BLASTX 325.0), t_PA4972 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTTCTGAAATTCGCCGCCCTCGGCAGCCTGGTCGTTCTGCTGAGCGCCTGCCAGAGCTTCTTCAAG 
CCCGGCCTCGACGACCCGCTGCCCACCGAGCGCCTCGCCAGCGAGCACCTGAAGCCCGGCTGCCAGGGCGAA 
CAGTGCCCCTTGGTAAACATCGACACCCTGAAGTTCCCCGACGAACCGCAGCTGGACCCGATCGTCGAGCGC 
GCCCTGCTGGAAATGACCCGGGAAAACAACGAAACGCCCCTGCCGGCATCGCTGGCGGCCTACGAGCGGCAG 
TTCCTGGACAGCGCCGAGCCGGGCTGGAGCAGCTACCTGCAAGCCAAGGTGCGCGAACAACATGACGGTCTG 
GTGATCATCGAGCTTTCCAGCTACCTGTTCACCGGCGGCGCCCACGGCATGCCCGGTCGCGGCTTCATCAAC 
TACGACCGCAGGCAGCACAAGGTGCTGAGCCTGCAGGACATGCTGGTTCCCGGCCAGGAAGAAGCCTTCTGG 
AAACAGGCCGAGCTGGCACACAAGGCCTGGCTGCTGGCCAACAAGCTCGACCAGGACGCCGATTTCCAGAAG 
ACCTGGCCGTTCCAGCGCACCCCGCACGTGGCATTGACCTTCGGCGCGGTGACGCTGAAGTACGACGCCTAC 
TCCATCGCGCCGTATTCCTATGCCCACCCCGAACTGAAGATCCCGTATCCGCGCCTGAACGGCATCGTCAAG 
CCGAACCTGTTCCCCGGCCGCGGCTGA