ViewGene

Locus Name:
GeneID:
Location:

GeneID:3111
TrivialName: PA14_63310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63310
PAO1 Ortholog Locus:PA4790
Sequence Length:750
Protein Length:249
Start: 5649827
Stop: 5650576
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08176.1|AE004892_7 (AE004892) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/249 (100%), Positives = 249/249 (100%)
Sequence:
ATGAGCGACCGCCACTTCGACGAACTGGCGACGCGCTTCGCCGAAAAGATCTACGGCGGCGCCAAGGGTGCG
ATCCGCCTCGCGGTACTCCAGGCCGACCTCGCCGAGGCCCTCCCGGAGCGACCTCTGCGGGTCCTCGACATC
GGCGCCGGGCTCGGCCACATGTCGCTCTGGCTGGCCGCTCGCGGCCACCGCGTAACCCTCGCCGAGCCAGCG
CAACCCATGCTCGACGGCGCCCGCCAGCGCTTCGCCGAAGCCGGGCAGGCCGCCGAATTCATCCAGGCGCCC
TGGCAGGAACTGCTCGGCCAGCTCACCGAGCCCTACGACCTGGTGCTCTGCCACGCCGTGCTCGAGTGGCTG
GCCGAACCCCATGCGATCCTGCCGGTGCTGCACCAACTCTGCGCACCCGGCGGCTGGCTGTCGCTGGCCTTC
TACAACCGCGACGCGCTGATCTACCGCAACCTGCTCAAGGGCCACTTCCGCAAGCTGCGCAAGGAGCGCTTC
GCCGGCGAGGGGCAGAGCCTGACCCCGCAGCGCCCGCTCGACCCGCGCGAGCTGGAACAGGCGCTGGCAGCG
CGTTGGCGCATCGAGGCGCGCAGCGGCGTGCGCGTGTTCCACGACTACATGCCGAGCGAGTTCCAGGCCAAG
GCCGAACGGCTCGACCTGGTGGAAATGGAACTGGCCTACCGCCGCCACCCGGCCTTTGCCGGGCTTGGCCGC
TACCTGCACTGGCTGTGCCGCCCGCAATGA
Translation:
MSDRHFDELATRFAEKIYGGAKGAIRLAVLQADLAEALPERPLRVLDIGAGLGHMSLWLAARGHRVTLAEPA
QPMLDGARQRFAEAGQAAEFIQAPWQELLGQLTEPYDLVLCHAVLEWLAEPHAILPVLHQLCAPGGWLSLAF
YNRDALIYRNLLKGHFRKLRKERFAGEGQSLTPQRPLDPRELEQALAARWRIEARSGVRVFHDYMPSEFQAK
AERLDLVEMELAYRRHPAFAGLGRYLHWLCRPQ*
AnnotationID:3119GeneID:3111
AnnotatorUID: diggins
Modification Date/Time: 2005-02-09 08:08:34
Gene Name:
Confidence Code:3
GeneProduct:putative methyltransferase
Cell Localization:()
Synonyms:smtA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66205.1|AE016248_8 (AE016776) methyltransferase, putative [Pseudomonas putida KT2440]
          Length = 249

 Score =  436 bits (1121), Expect = e-122
 Identities = 208/249 (83%), Positives = 225/249 (90%)

>gb|AAO54282.1| (AE016858) smtA protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 221

 Score =  355 bits (911), Expect = 1e-97
 Identities = 169/220 (76%), Positives = 190/220 (86%)

>gb|AAM86320.1|AE013879_10 (AE013879) S-adenosylmethionine-dependent methyltransferase
           [Yersinia pestis KIM]
          Length = 263

 Score =  185 bits (469), Expect = 2e-46
 Identities = 109/255 (42%), Positives = 151/255 (59%), Gaps = 18/255 (7%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:6225
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23367
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37694
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3111_cdd.html
URL:
ReferenceID:38160
Author/Investigator(s): Yamanaka K, Ogura T, Niki H, Hiraga S.
Title: Characterization of the smtA gene encoding an S-adenosylmethionine-dependent methyltransferase of Escherichia coli.
PubMed: 8566713
MedLine:
Source:
FEMS Microbiol Lett. 1995 Nov 1;133(1-2):59-63.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8566713&query_hl=14
Homologs By Global Alignment
Gene ID:3111

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5007 PA4790_tr translation of PA4790 249 99.99 99.99 0 1312.0
140980 gb|AAG08176.1|AE004892_7 (AE004892) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 249 99.99 99.99 0 1312.0
140981 gb|AAN66205.1|AE016248_8 (AE016776) methyltransferase, putative [Pseudomonas putida KT2440] 249 83.53 90.36 0 1121.0
140982 gb|AAO54282.1| (AE016858) smtA protein [Pseudomonas syringae pv. tomato str. DC3000] 249 67.87 76.30 28 909.0
140984 emb|CAC90231.1| (AJ414148) putative methyltransferase [Yersinia pestis CO92] 270 41.48 57.77 30 488.0
GC ORFID: 46113How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4790Glimmer Score:
Start: 4913507Stop: 4914256
Length: 750
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4790 translation of PA4790Homolog Bit Score 509.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3615 (ORF: BLASTX 411.0), t_PA4790 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGACCGCCACTTCGACGAACTGGCGACGCGCTTCGCCGAAAAGATCTACGGCGGCGCCAAGGGTGCG
ATCCGCCTCGCGGTACTCCAGGCCGACCTCGCCGAGGCCCTCCCGGAGCGACCTCTGCGGGTCCTCGACATC
GGCGCCGGGCTCGGCCACATGTCGCTCTGGCTGGCCGCTCGCGGCCACCGCGTAACCCTCGCCGAGCCAGCG
CAACCCATGCTCGACGGCGCCCGCCAGCGCTTCGCCGAAGCCGGGCAGGCCGCCGAATTCATCCAGGCGCCC
TGGCAGGAACTGCTCGGCCAGCTCACCGAGCCCTACGACCTGGTGCTCTGCCACGCCGTGCTCGAGTGGCTG
GCCGAACCCCATGCGATCCTGCCGGTGCTGCACCAACTCTGCGCACCCGGCGGCTGGCTGTCGCTGGCCTTC
TACAACCGCGACGCGCTGATCTACCGCAACCTGCTCAAGGGCCACTTCCGCAAGCTGCGCAAGGAGCGCTTC
GCCGGCGAGGGGCAGAGCCTGACCCCGCAGCGCCCGCTCGACCCGCGCGAGCTGGAACAGGCGCTGGCAGCG
CGTTGGCGCATCGAGGCGCGCAGCGGCGTGCGCGTGTTCCACGACTACATGCCGAGCGAGTTCCAGGCCAAG
GCCGAACGGCTCGACCTGGTGGAAATGGAACTGGCCTACCGCCGCCACCCGGCCTTTGCCGGGCTTGGCCGC
TACCTGCACTGGCTGTGCCGCCCGCAATGA