ViewGene
Locus Name:
GeneID:
Location:

GeneID:3110
TrivialName: PA14_57740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57740
PAO1 Ortholog Locus:PA4445
Sequence Length:759
Protein Length:252
Start: 5143308
Stop: 5142550
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07833.1|AE004859_2 (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 252/252 (100%), Positives = 252/252 (100%)
Sequence:
ATGGCTATCGCCCTGAGCACCCTGGTCGAAGAGGCCGACCGTTATCTGGATGCCGCGCGCATCCAGGACTAC
TGCCCGAACGGCCTGCAGGTCGAGGGCCGGCCGCAGGTGCGGCGGATCGTCAGCGGGGTCACTGCCAGCCAG
GCGCTGCTGGATGCCGCCGTGGAGGCCGACGCCGACGTGGTGCTGGTGCATCACGGCTACTTCTGGAAGGGT
GAGAATCCCTGCGTGGTCGGCATGAAGCAACGGCGCCTGAAGACCCTGCTGAACAACGATATCAGTCTGCTC
GCTTACCACCTGCCGCTGGATCTGCATCCGGAGGTGGGTAACAACGTGCAGCTCGCCCGGCAGCTCGGCTTC
GAAGTGGAAGGGCCGTTGGAGCCGGGCAACCCGCGTTCCATCGTCCTCCTCGGTTCGCTTGCCGAGCCGATG
CAGCCTGCCGATTTCGCTCGGCATGTGCGCGATGCGCTGGGGCGCGAGCCGCTGCTGGTCGACGCCGGCCAG
CCGATCCGACGCATCGCCTGGTGCACCGGCGGCGCCCAGGGTTATATCGACCAGGCGATCGCCGCCGGCGTC
GATGCCTACCTGACCGGCGAGGTTTCCGAGCAGACCGTGCACAGCGCGCGGGAGAACGGCATCAGCTTCATC
GCCGCCGGACACCATGCCACCGAGCGCTACGGGGTACAGGCGCTGGGCGACTACCTGGGCAAGCGCTTCGCC
ATCGAGCACTTGTTCATCGACTGTCCTAATCCTGCCTGA
Translation:
MAIALSTLVEEADRYLDAARIQDYCPNGLQVEGRPQVRRIVSGVTASQALLDAAVEADADVVLVHHGYFWKG
ENPCVVGMKQRRLKTLLNNDISLLAYHLPLDLHPEVGNNVQLARQLGFEVEGPLEPGNPRSIVLLGSLAEPM
QPADFARHVRDALGREPLLVDAGQPIRRIAWCTGGAQGYIDQAIAAGVDAYLTGEVSEQTVHSARENGISFI
AAGHHATERYGVQALGDYLGKRFAIEHLFIDCPNPA*
AnnotationID:3118GeneID:3110
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 05:05:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4445
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6223




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23365




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31484




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3110_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3110
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5006
                           PA4445_tr
                           translation of PA4445
                           252
                           99.99
                           99.99
                           0
                           1310.0
     

     
     
140944
                           gb|AAG07833.1|AE004859_2
                           (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           252
                           99.99
                           99.99
                           0
                           1310.0
     

     
     
140945
                           gb|AAO57883.1|
                           (AE016872) conserved hypothetical protein TIGR00486 [Pseudomonas syringae pv. tomato str. DC3000]
                           252
                           80.95
                           89.28
                           0
                           1092.0
     

     
     
140946
                           gb|AAN66926.1|AE016321_2
                           (AE016778) conserved hypothetical protein TIGR00486 [Pseudomonas putida KT2440]
                           252
                           79.36
                           89.28
                           0
                           1080.0
     

     
     
140949
                           emb|CAD05173.1|
                           (AL627267) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           255
                           55.29
                           70.58
                           11
                           711.0
     

     






      

          
GC ORFID: 46112How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4445Glimmer Score: 

          
Start: 4406987Stop: 4406229

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4445 translation of PA4445Homolog Bit Score 509.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2022 (ORF: BLASTX 422.0), t_PA4445 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTATCGCCCTGAGCACCCTGGTCGAAGAGGCCGACCGTTATCTGGATGCCGCGCGCATCCAGGACTAC 
TGCCCGAACGGCCTGCAGGTCGAGGGCCGGCCGCAGGTGCGGCGGATCGTCAGCGGGGTCACTGCCAGCCAG 
GCGCTGCTGGATGCCGCCGTGGAGGCCGACGCCGACGTGGTGCTGGTGCATCACGGCTACTTCTGGAAGGGT 
GAGAATCCCTGCGTGGTCGGCATGAAGCAACGGCGCCTGAAGACCCTGCTGAACAACGATATCAGTCTGCTC 
GCTTACCACCTGCCGCTGGATCTGCATCCGGAGGTGGGTAACAACGTGCAGCTCGCCCGGCAGCTCGGCTTC 
GAAGTGGAAGGGCCGTTGGAGCCGGGCAACCCGCGTTCCATCGTCCTCCTCGGTTCGCTTGCCGAGCCGATG 
CAGCCTGCCGATTTCGCTCGGCATGTGCGCGATGCGCTGGGGCGCGAGCCGCTGCTGGTCGACGCCGGCCAG 
CCGATCCGACGCATCGCCTGGTGCACCGGCGGCGCCCAGGGTTATATCGACCAGGCGATCGCCGCCGGCGTC 
GATGCCTACCTGACCGGCGAGGTTTCCGAGCAGACCGTGCACAGCGCGCGGGAGAACGGCATCAGCTTCATC 
GCCGCCGGACACCATGCCACCGAGCGCTACGGGGTACAGGCGCTGGGCGACTACCTGGGCAAGCGCTTCGCC 
ATCGAGCACTTGTTCATCGACTGTCCTAATCCTGCCTGA