ViewGene
Locus Name:
GeneID:
Location:

GeneID:311
TrivialName: PA14_70570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70570
PAO1 Ortholog Locus:PA5345
Sequence Length:2076
Protein Length:691
Start: 6285895
Stop: 6287970
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08730.1|AE004946_14 (AE004946) ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1]
Identities = 691/691 (100%), Positives = 691/691 (100%)
Sequence:
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCACTGGCGGAGAAGCTCGCT
CGGGTAGGCCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTC
ACCGCCATCGGCGCCCTGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTG
ATGGGGCGCCGCCGCAGCCTGCTGGTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCAT
TTCAGCCAGGCGCAGAAGGACGGTCTCAAGCGCGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGC
GCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGCTGAACGGCGACGAGCCGATTCCGGTGGAGCAG
ACCCTGACGCCGATCTACCCGACTACCGAAGGACTCACCCAGCAGCGCCTGCGCCAGTTGAGCCAACAGGCC
CTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCGCGATTACCAACTTGGC
CCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGGCCGAAGGC
CGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAAC
CTCGGCTTCCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAA
CCGATGCTGCGCCTGGTGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAA
GCCATAGAGGCCGGCTACCAGGTGGCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAAC
TTCAGCAAGTGGCTCCAGCCGCTGGACATCGAAGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGC
GCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGGTGGTCGGCACCCACGCGCTGTTCCAGGATGAA
GTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGCTTCGGCGTGCAGCAGCGCCTGGCC
CTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGCCACGCCGATCCCGCGG
ACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGCGTACCCCG
GTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACC
ACCTACGAAGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCG
GACAAGGCCGTGGTGATGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAG
GTCGGCGTCGACGTGCCCAACGCCAGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTG
CACCAGCTACGCGGCCGTGTTGGCCGGGGCAGCGCCGCCAGCCACTGCGTGCTGCTCTACCACCCGCCGCTG
TCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAGACCAGCGACGGCTTCGTCATCGCCGAGAAGGAC
CTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGCCTGCTGCAATTCAAGGTCGCCGAC
CTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCTGGCGCACTGGCCGCAG
CATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA
Translation:
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVV
MGRRRSLLVRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQ
TLTPIYPTTEGLTQQRLRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEG
RHWAQLRLAFEELLTHQLSLQRLREAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDE
PMLRLVQGDVGAGKTVVAALAALQAIEAGYQVALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKAR
AAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDGRLCPHQLIMTATPIPR
TLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACREGRQAYWVCTLIEESEELTCQAAET
TYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQL
HQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVAD
LMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV*
AnnotationID:321GeneID:311
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 19:07:47
Gene Name:recG
Confidence Code:2
GeneProduct:ATP-dependent DNA helicase RecG
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1200
Secondary Functional Category(ies):transcription, RNA processing and degradation
EC Number:3.6.1.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53619.1| (AE016856) ATP-dependent DNA helicase RecG [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 691

 Score = 1190 bits (3078), Expect = 0.0
 Identities = 586/691 (84%), Positives = 639/691 (92%)

>gb|AAN70875.1|AE016731_10 (AE016794) ATP-dependent DNA helicase RecG [Pseudomonas putida
           KT2440]
          Length = 692

 Score = 1187 bits (3071), Expect = 0.0
 Identities = 592/692 (85%), Positives = 643/692 (92%), Gaps = 1/692 (0%)

>dbj|BAC58420.1| (AP005073) ATP-dependent DNA helicase RecG [Vibrio
           parahaemolyticus]
          Length = 693

 Score =  793 bits (2049), Expect = 0.0
 Identities = 399/689 (57%), Positives = 520/689 (75%), Gaps = 4/689 (0%)






 
Structural Features:
COG1200, RecG, RecG-like helicase 
[DNA replication, recombination, and repair / Transcription]
CD-Length = 677 residues,  99.0% aligned
Score =  908 bits (2349), Expect = 0.0
Identities = 388/683 (56%), Positives = 479/683 (70%), Gaps = 16/683 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:625




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17767




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34761




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:311_cdd.html


    		




 
URL:

















    ReferenceID:35689




  
Author/Investigator(s):
        Lloyd RG, Sharples GJ.





  
Title:
        Molecular organization and nucleotide sequence of the recG locus of Escherichia coli K-12.




  
PubMed:
        1938888


MedLine:
        




    
Source:
J Bacteriol. 1991 Nov;173(21):6837-43.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1938888

















    ReferenceID:35690




  
Author/Investigator(s):
        Niga T, Yoshida H, Hattori H, Nakamura S, Ito H.





  
Title:
        Cloning and sequencing of a novel gene (recG) that affects the quinolone susceptibility of Staphylococcus aureus.




  
PubMed:
        9257758


MedLine:
        




    
Source:
Antimicrob Agents Chemother. 1997 Aug;41(8):1770-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9257758









           
Homologs By Global Alignment 

           

       



     
Gene ID:311
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
510
                           PA5345_tr
                           translation of PA5345
                           691
                           99.99
                           99.99
                           0
                           3510.0
     

     
     
25515
                           gb|AAG08730.1|AE004946_14
                           (AE004946) ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1]
                           691
                           99.99
                           99.99
                           0
                           3510.0
     

     
     
25517
                           gb|AAN70875.1|AE016731_10
                           (AE016794) ATP-dependent DNA helicase RecG [Pseudomonas putida KT2440]
                           692
                           85.54
                           92.91
                           1
                           3073.0
     

     
     
25516
                           gb|AAO53619.1|
                           (AE016856) ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato str. DC3000]
                           691
                           84.80
                           92.47
                           0
                           3078.0
     

     
     
25532
                           dbj|BAB37950.1|
                           (AP002566) DNA helicase RecG [Escherichia coli O157:H7]
                           696
                           59.48
                           73.41
                           8
                           2038.0
     

     






      

          
GC ORFID: 43313How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5345Glimmer Score: 

          
Start: 5549584Stop: 5551659

          
Length: 2076


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5345 translation of PA5345Homolog Bit Score 1356.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3950 (ORF: BLASTX 1200.0), t_PA5345 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCACTGGCGGAGAAGCTCGCT 
CGGGTAGGCCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTC 
ACCGCCATCGGCGCCCTGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTG 
ATGGGGCGCCGCCGCAGCCTGCTGGTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCAT 
TTCAGCCAGGCGCAGAAGGACGGTCTCAAGCGCGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGC 
GCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGCTGAACGGCGACGAGCCGATTCCGGTGGAGCAG 
ACCCTGACGCCGATCTACCCGACTACCGAAGGACTCACCCAGCAGCGCCTGCGCCAGTTGAGCCAACAGGCC 
CTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCGCGATTACCAACTTGGC 
CCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGGCCGAAGGC 
CGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC 
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAAC 
CTCGGCTTCCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAA 
CCGATGCTGCGCCTGGTGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAA 
GCCATAGAGGCCGGCTACCAGGTGGCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAAC 
TTCAGCAAGTGGCTCCAGCCGCTGGACATCGAAGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGC 
GCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGGTGGTCGGCACCCACGCGCTGTTCCAGGATGAA 
GTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGCTTCGGCGTGCAGCAGCGCCTGGCC 
CTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGCCACGCCGATCCCGCGG 
ACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGCGTACCCCG 
GTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA 
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACC 
ACCTACGAAGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCG 
GACAAGGCCGTGGTGATGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAG 
GTCGGCGTCGACGTGCCCAACGCCAGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTG 
CACCAGCTACGCGGCCGTGTTGGCCGGGGCAGCGCCGCCAGCCACTGCGTGCTGCTCTACCACCCGCCGCTG 
TCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAGACCAGCGACGGCTTCGTCATCGCCGAGAAGGAC 
CTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGCCTGCTGCAATTCAAGGTCGCCGAC 
CTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCTGGCGCACTGGCCGCAG 
CATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA