ViewGene
Locus Name:
GeneID:
Location:

GeneID:3108
TrivialName: PA14_11480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11480
PAO1 Ortholog Locus:PA4049
Sequence Length:747
Protein Length:248
Start: 994341
Stop: 995087
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07436.1|AE004821_9 (AE004821) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 247/248 (99%), Positives = 247/248 (99%)
Sequence:
ATGCGTCTGCTCGTCCTGTTCTGCTGCCTGTGGCTGCTGCCCGGCGTCGCTTCCGCCGAACCCTCCGTGGGT
GAGATCCGCGTGGTCAGCGAAACCTGGACGCGCTACACCCAGGAGGACGGTCGCGGGGTGGCCTGGGACCTG
CTGCGGGCCGTCTACGAGCCGGCCGGGGTACGCCTGCGGATCGCCAACGAGCCCTATACCCGGGCGGTCGGC
CTGGTCCTGCGCGGCGAGGCCGACGCCTGGGTCGGCGCCTACCGCGGGGAAATCGACGAAGCGCTTTACCCT
CGCTGGCCCTATGACGTCGATCCGATTGCCGTGCTTTCCCTGAAGGACAATCCGCCGCCGCCGCTGGAGGGC
CTGAGCCGGTTCCGCCTGTCATGGATGCGTGGCTACGCCTTCGCCCGCTATTTCCCTACCCTGACCCCGCAC
AGCGAGTTGCAGCGCCGCACCTCGGCGCTGCCGATGCTGCTCAACCACCGGGTCGACTATTTCATCGATTCG
CGTCCGGAACTGGAGGAAATGCTCGCAGGGGCCGGAGCGCTGGCGGCTGAGTACCGCATCACCGACGTCACT
CGGTTGCCGCTGTATCTTGGCTTCTCCGATTCCCCCAGGGGCCGTGAGCTGCTGGCGCTGTTCGACCGGCGC
ATGCGGCAGTTGCATGCCAGCGGCGAGCTGGAGCGGATCTTCGCCCGCTGGAACTGGCCCTATGCGCCGTTG
AAGGCAATCCTGCCACCCAAGGAGTGA
Translation:
MRLLVLFCCLWLLPGVASAEPSVGEIRVVSETWTRYTQEDGRGVAWDLLRAVYEPAGVRLRIANEPYTRAVG
LVLRGEADAWVGAYRGEIDEALYPRWPYDVDPIAVLSLKDNPPPPLEGLSRFRLSWMRGYAFARYFPTLTPH
SELQRRTSALPMLLNHRVDYFIDSRPELEEMLAGAGALAAEYRITDVTRLPLYLGFSDSPRGRELLALFDRR
MRQLHASGELERIFARWNWPYAPLKAILPPKE*
AnnotationID:3116GeneID:3108
AnnotatorUID: urbach
Modification Date/Time: 2004-10-06 15:03:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4049
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
Similarity to:
gnl|CDD|25526 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding
proteins, family 3
Length = 224
Score = 56.0 bits (135), Expect = 9e-09
Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 10/208 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6219




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23361




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3108
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5004
                           PA4049_tr
                           translation of PA4049
                           248
                           99.59
                           99.59
                           0
                           1310.0
     

     
     
140938
                           gb|AAG07436.1|AE004821_9
                           (AE004821) hypothetical protein PA4049 [Pseudomonas aeruginosa PAO1]
                           248
                           99.59
                           99.59
                           0
                           1310.0
     

     
     
140939
                           gb|AAN66148.1|AE016242_16
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           250
                           46.40
                           63.20
                           5
                           580.0
     

     






      

          
GC ORFID: 46110How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4049Glimmer Score: 

          
Start: 3959596Stop: 3958850

          
Length: 747


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4049 translation of PA4049Homolog Bit Score 509.0

          
Other Homologs:  t_PA4049 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCTGCTCGTCCTGTTCTGCTGCCTGTGGCTGCTGCCCGGCGTCGCTTCCGCCGAACCCTCCGTGGGT 
GAGATCCGCGTGGTCAGCGAAACCTGGACGCGCTACACCCAGGAGGACGGTCGCGGGGTGGCCTGGGACCTG 
CTGCGGGCCGTCTACGAGCCGGCCGGGGTACGCCTGCGGATCGCCAACGAGCCCTATACCCGGGCGGTCGGC 
CTGGTCCTGCGCGGCGAGGCCGACGCCTGGGTCGGCGCCTACCGCGGGGAAATCGACGAAGCGCTTTACCCT 
CGCTGGCCCTATGACGTCGATCCGATTGCCGTGCTTTCCCTGAAGGACAATCCGCCGCCGCCGCTGGAGGGC 
CTGAGCCGGTTCCGCCTGTCATGGATGCGTGGCTACGCCTTCGCCCGCTATTTCCCTACCCTGACCCCGCAC 
AGCGAGTTGCAGCGCCGCACCTCGGCGCTGCCGATGCTGCTCAACCACCGGGTCGACTATTTCATCGATTCG 
CGTCCGGAACTGGAGGAAATGCTCGCAGGGGCCGGAGCGCTGGCGGCTGAGTACCGCATCACCGACGTCACT 
CGGTTGCCGCTGTATCTTGGCTTCTCCGATTCCCCCAGGGGCCGTGAGCTGCTGGCGCTGTTCGACCGGCGC 
ATGCGGCAGTTGCATGCCAGCGGCGAGCTGGAGCGGATCTTCGCCCGCTGGAACTGGCCCTATGCGCCGTTG 
AAGGCAATCCTGCCACCCAAGGAGTGA