ViewGene
Locus Name:
GeneID:
Location:

GeneID:3107
TrivialName: PA14_14370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14370
PAO1 Ortholog Locus:PA3838
Sequence Length:795
Protein Length:264
Start: 1226859
Stop: 1226065
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07225.1|AE004801_3 (AE004801) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 264/264 (100%), Positives = 264/264 (100%)
Sequence:
ATGCTCAGCGCGAAGAACCTGAAGATCACCTTCAACCCCGGCACCCCCATCGAGACCCGCGCCCTGCGCGGC
CTGTCGCTGGACATCCCGGCCGGCCAGTTCGTCACCGTGATCGGCTCCAACGGAGCCGGCAAGTCGACCTTC
CTCAACGCGGTATCCGGCGACCTGCCGATCGACAGCGGGCAGATCCTGATCGACGACGAAGACGTCACCCGC
AAGCCGGTCTGGGCCCGCGCCAACCGCGTCGCGCGGGTGTTCCAGGACCCCATGGCGGGTACCTGCGAGGAC
CTCACCATCGAGGAGAACATGGCCCTGGCGCAGCGTCGCGGTGCCGGTCGCGGTCTCGGCAGGGCGGTGCAG
GCATCGATGCGCGACGGTTTCCGGGAAAGCCTGGCGACCCTCGGCCTCGGCCTGGAGAACCGCCTCGGCGAC
CGCATCGGCCTGCTCTCCGGCGGCCAGCGCCAGGCCGTCAGCCTGCTGATGGCGGCGCTGCAGCCGTCGCGC
ATCCTGTTGCTCGACGAACACACCGCGGCGCTCGACCCGCGCACCGCCGACTTCGTCCTGCATCTCACCGCA
CGGATCGTCGCCGAGAAGAAACTCACCACCATGATGGTCACCCACAGCATGCGCCAGGCGCTGGACGTGGGC
GAGCGCACGGTGATGCTGCACCAGGGCCAGGTGGTGCTGGACGTCTCCGGCGAGCAACGCAAGGGCCTCGAC
GTACCGGATCTGCTGGCGATGTTCGAGAAGGTGCGCGGCGAGAAGCTCGCCGACGACGCCCTCCTCCTAGGC
TGA
Translation:
MLSAKNLKITFNPGTPIETRALRGLSLDIPAGQFVTVIGSNGAGKSTFLNAVSGDLPIDSGQILIDDEDVTR
KPVWARANRVARVFQDPMAGTCEDLTIEENMALAQRRGAGRGLGRAVQASMRDGFRESLATLGLGLENRLGD
RIGLLSGGQRQAVSLLMAALQPSRILLLDEHTAALDPRTADFVLHLTARIVAEKKLTTMMVTHSMRQALDVG
ERTVMLHQGQVVLDVSGEQRKGLDVPDLLAMFEKVRGEKLADDALLLG*
AnnotationID:3115GeneID:3107
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:33
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-transporter ATP-binding component
Cell Localization:()
Synonyms:PA3838
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1101,cd00267,COG1120
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33846.1| (BX640447) putative ABC-transporter ATP-binding component
           [Bordetella bronchiseptica]
          Length = 264

 Score =  454 bits (1169), Expect = e-127
 Identities = 234/264 (88%), Positives = 248/264 (93%)

>emb|CAD15440.1| (AL646066) PROBABLE ATP-BINDING ABC TRANSPORTER PROTEIN [Ralstonia
           solanacearum]
          Length = 264

 Score =  381 bits (979), Expect = e-105
 Identities = 199/264 (75%), Positives = 219/264 (82%)








 
Structural Features:
COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component 
CD-Length = 263 residues, 100.0% aligned
Score =  389 bits (1000), Expect = 4e-109
Identities = 177/263 (67%), Positives = 205/263 (77%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues,  97.7% aligned
Score =  147 bits (372), Expect = 3e-36
Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 15/227 (6%)

COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, 
ATPase components 
[Inorganic ion transport and metabolism / Coenzyme metabolism]
CD-Length = 258 residues,  84.1% aligned
Score =  146 bits (369), Expect = 8e-36
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 15/230 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23359




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31721




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3107_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3107
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5003
                           PA3838_tr
                           translation of PA3838
                           264
                           99.99
                           99.99
                           0
                           1311.0
     

     
     
140904
                           gb|AAG07225.1|AE004801_3
                           (AE004801) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           264
                           99.99
                           99.99
                           0
                           1311.0
     

     
     
140905
                           emb|CAE33846.1|
                           (BX640447) putative ABC-transporter ATP-binding component [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           264
                           88.63
                           93.93
                           0
                           1169.0
     

     
     
140906
                           emb|CAE37055.1|
                           (BX640428) putative ABC-transporter ATP-binding component [Bordetella parapertussis]
                           264
                           88.63
                           93.93
                           0
                           1169.0
     

     
     
140907
                           emb|CAE42348.1|
                           (BX640417) putative ABC-transporter ATP-binding component [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           264
                           88.25
                           93.93
                           0
                           1165.0
     

     






      

          
GC ORFID: 46109How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3838Glimmer Score: 

          
Start: 3727079Stop: 3727873

          
Length: 795


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3838 translation of PA3838Homolog Bit Score 509.0

          
Other Homologs:  t_PA3838 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAGCGCGAAGAACCTGAAGATCACCTTCAACCCCGGCACCCCCATCGAGACCCGCGCCCTGCGCGGC 
CTGTCGCTGGACATCCCGGCCGGCCAGTTCGTCACCGTGATCGGCTCCAACGGAGCCGGCAAGTCGACCTTC 
CTCAACGCGGTATCCGGCGACCTGCCGATCGACAGCGGGCAGATCCTGATCGACGACGAAGACGTCACCCGC 
AAGCCGGTCTGGGCCCGCGCCAACCGCGTCGCGCGGGTGTTCCAGGACCCCATGGCGGGTACCTGCGAGGAC 
CTCACCATCGAGGAGAACATGGCCCTGGCGCAGCGTCGCGGTGCCGGTCGCGGTCTCGGCAGGGCGGTGCAG 
GCATCGATGCGCGACGGTTTCCGGGAAAGCCTGGCGACCCTCGGCCTCGGCCTGGAGAACCGCCTCGGCGAC 
CGCATCGGCCTGCTCTCCGGCGGCCAGCGCCAGGCCGTCAGCCTGCTGATGGCGGCGCTGCAGCCGTCGCGC 
ATCCTGTTGCTCGACGAACACACCGCGGCGCTCGACCCGCGCACCGCCGACTTCGTCCTGCATCTCACCGCA 
CGGATCGTCGCCGAGAAGAAACTCACCACCATGATGGTCACCCACAGCATGCGCCAGGCGCTGGACGTGGGC 
GAGCGCACGGTGATGCTGCACCAGGGCCAGGTGGTGCTGGACGTCTCCGGCGAGCAACGCAAGGGCCTCGAC 
GTACCGGATCTGCTGGCGATGTTCGAGAAGGTGCGCGGCGAGAAGCTCGCCGACGACGCCCTCCTCCTAGGC 
TGA