ViewGene
Locus Name:
GeneID:
Location:

GeneID:3106
TrivialName: PA14_22670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22670
PAO1 Ortholog Locus:PA3212
Sequence Length:795
Protein Length:264
Start: 1972350
Stop: 1971556
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06600.1|AE004744_15 (AE004744) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 261/264 (98%), Positives = 262/264 (99%)
Sequence:
GTGAGCCAGGACAACCCGCAGGCGATCATCCAGGTCCGCGACCTGTGCAACCGTTTCGGCGCCCAGGCGGTC
CACGAGCACCTCGACCTCGACGTCCGTCGCGGCGAGATCCTCGGCGTGGTCGGCGGCTCCGGCACCGGCAAG
TCGGTGCTGCTGCGCAGTATCGTCGGCCTGCGCCGGCCGACCTCCGGCAGCGTGCGGGTGTTCGGCGAAGAC
CTGCTGCAACTGCCGGAGGAGCGCCGCTCCCTGGTCGAACGGCGCTTCGGCGTGCTGTTCCAGCAGGGCGCG
CTGTTTTCCTCGCTTACCGTGGTGGAGAACGTCGCCCTGCCGCTGATCGAGAACGCCGGCCTGCCGCGCGCC
GACGCCGAGCACCTGGCCCAGGTCAAGCTGGCCCTGGCCGGGCTACCGGCCAACGCCGGCGACAAGTATCCG
GCCTCGCTTTCCGGCGGCATGATCAAGCGCGCCGCCCTGGCCCGCGCCCTGGTGCTGGACCCGGACATCCTG
TTCCTCGACGAGCCCACCGCCGGCCTCGACCCGATCGGCGCGGCGGCCTTCGACAACCTGATCCGTACCCTG
CGCGACGCCCTCGGCCTGACGGTGTTCCTGGTCACCCATGACCTGGACACCCTGTACACCATCTGCGACCGG
GTCGCCGTGCTGTCGCAGAAGAAGGTCCTGGTGGTCGATACCCTGGAACGGGTCGCCGCCACCGACGACCCC
TGGGTCCGCGAATACTTCCACGGGCCGCGCGGGCGCGCCGCCCACCAAGCCGCCGCCGTGCCGGAGAATCAC
TGA
Translation:
MSQDNPQAIIQVRDLCNRFGAQAVHEHLDLDVRRGEILGVVGGSGTGKSVLLRSIVGLRRPTSGSVRVFGED
LLQLPEERRSLVERRFGVLFQQGALFSSLTVVENVALPLIENAGLPRADAEHLAQVKLALAGLPANAGDKYP
ASLSGGMIKRAALARALVLDPDILFLDEPTAGLDPIGAAAFDNLIRTLRDALGLTVFLVTHDLDTLYTICDR
VAVLSQKKVLVVDTLERVAATDDPWVREYFHGPRGRAAHQAAAVPENH*
AnnotationID:3114GeneID:3106
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 09:09:41
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:yrbF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00267,pfam00005,COG1127
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65775.1|AE016203_8 (AE016774) ABC transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 263

 Score =  390 bits (1002), Expect = e-108
 Identities = 198/250 (79%), Positives = 219/250 (87%)

>gb|AAO28426.1| (AE012555) ABC transporter ATP-binding protein [Xylella fastidiosa
           Temecula1]
          Length = 279

 Score =  307 bits (787), Expect = 4e-83
 Identities = 159/249 (63%), Positives = 190/249 (76%), Gaps = 1/249 (0%)

>dbj|BAC51158.1| (AP005956) ABC transporter ATP-binding protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 262

 Score =  271 bits (694), Expect = 2e-72
 Identities = 137/245 (55%), Positives = 177/245 (72%)








 
Structural Features:
cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues, 100.0% aligned
Score =  168 bits (426), Expect = 8e-43
Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 7/223 (3%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues,  99.5% aligned
Score =  162 bits (411), Expect = 5e-41
Identities = 85/188 (45%), Positives = 111/188 (59%), Gaps = 6/188 (3%)

COG1127, Ttg2A, ABC-type transport system involved in resistance 
to organic solvents, ATPase component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 263 residues,  98.5% aligned
Score =  362 bits (932), Expect = 2e-101
Identities = 142/259 (54%), Positives = 177/259 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14739




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23357




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32333




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3106_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3106
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4997
                           PA3212_tr
                           translation of PA3212
                           264
                           98.86
                           99.24
                           0
                           1311.0
     

     
     
140781
                           gb|AAG06600.1|AE004744_15
                           (AE004744) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           264
                           98.48
                           99.24
                           0
                           1308.0
     

     
     
140782
                           gb|AAN65775.1|AE016203_8
                           (AE016774) ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           266
                           75.18
                           83.08
                           5
                           995.0
     

     
     
140783
                           gb|AAM39950.1|
                           (AE012161) ABC transporter ATP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           276
                           60.50
                           69.56
                           12
                           804.0
     

     
     
140785
                           gb|AAM38414.1|
                           (AE012007) ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           281
                           59.43
                           68.68
                           18
                           795.0
     

     






      

          
GC ORFID: 46108How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3212Glimmer Score: 

          
Start: 2981581Stop: 2982375

          
Length: 795


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3212 translation of PA3212Homolog Bit Score 509.0

          
Other Homologs:  t_PA4456 (ORF: BLASTX 174.0), t_PA3212 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCCAGGACAACCCGCAGGCGATCATCCAGGTCCGCGACCTGTGCAACCGTTTCGGCGCCCAGGCGGTC 
CACGAGCACCTCGACCTCGACGTCCGTCGCGGCGAGATCCTCGGCGTGGTCGGCGGCTCCGGCACCGGCAAG 
TCGGTGCTGCTGCGCAGTATCGTCGGCCTGCGCCGGCCGACCTCCGGCAGCGTGCGGGTGTTCGGCGAAGAC 
CTGCTGCAACTGCCGGAGGAGCGCCGCTCCCTGGTCGAACGGCGCTTCGGCGTGCTGTTCCAGCAGGGCGCG 
CTGTTTTCCTCGCTTACCGTGGTGGAGAACGTCGCCCTGCCGCTGATCGAGAACGCCGGCCTGCCGCGCGCC 
GACGCCGAGCACCTGGCCCAGGTCAAGCTGGCCCTGGCCGGGCTACCGGCCAACGCCGGCGACAAGTATCCG 
GCCTCGCTTTCCGGCGGCATGATCAAGCGCGCCGCCCTGGCCCGCGCCCTGGTGCTGGACCCGGACATCCTG 
TTCCTCGACGAGCCCACCGCCGGCCTCGACCCGATCGGCGCGGCGGCCTTCGACAACCTGATCCGTACCCTG 
CGCGACGCCCTCGGCCTGACGGTGTTCCTGGTCACCCATGACCTGGACACCCTGTACACCATCTGCGACCGG 
GTCGCCGTGCTGTCGCAGAAGAAGGTCCTGGTGGTCGATACCCTGGAACGGGTCGCCGCCACCGACGACCCC 
TGGGTCCGCGAATACTTCCACGGGCCGCGCGGGCGCGCCGCCCACCAAGCCGCCGCCGTGCCGGAGAATCAC 
TGA