ViewGene

Locus Name:
GeneID:
Location:

GeneID:3104
TrivialName: PA14_38160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38160
PAO1 Ortholog Locus:PA2039
Sequence Length:759
Protein Length:252
Start: 3404017
Stop: 3404775
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05427.1|AE004630_4 (AE004630) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 251/252 (99%), Positives = 252/252 (100%)
Sequence:
ATGCGCCTGCTGGCATGCTGGACCGACGTTCACCACCGCCATGCCCCCATGACTGCCCACGACCTGCCCCGC
CAAGCCTTTCTCCGCGGTGCCGTCGCCATCCTCCCATTGTCCCTGGCCGTCGCGCCCTGGGGGCTGCTGGCG
GGATCGATGGCCATCGAAGCCAACCTTACCCCGGCCGAGGGCCAGGGCCTGTCCGCCATCGTCTTCGCCGGC
GCCGCCCAGTTGGTGGCGATCGGCATGCTCAAGGGCGGTGCCGGGTTCTTTTCGATCATCTTCACCACCCTC
CTCCTGACCTCGCAGCACCTGCTCTACGGCATGAGCTTGCGGCCGGTCCTGTCGCCTCTGCCGGGACGCTGG
CGGATCGGCCTGGGCTTCCTGCTCACCGACGAGTTCTTCGCCCTCGCCAGCCAGCACGACCGGCGCAACTTC
AACCGCTGGTACGCCCTCGGCGTCGGCCTGACCTTCTATATCGCCTGGAACCTGTTCACCCTCGCCGGCATC
CTGCTTGGCCGCAGCATTCCCGGTCTCGAACACCTGGGCCTGGATTTCTCCATCGCCGCCACCTTCATCGCG
CTGGTCGCGCCACTGGTGCGCAACGTACCGACGCTGGTCTGCGTGGCCACCTCGCTGTTCTGCTCGGTGCTG
TTCAGCCACTGGCAATGGAGTTCGGCGCTGGTCCTCGCCGGTCTCGCCGGGATGGCCGCCGGTTTCGTCTGC
AACAAGCTGTATCGGGAGGCGCCATGGTCTGGGCAGTGA
Translation:
MRLLACWTDVHHRHAPMTAHDLPRQAFLRGAVAILPLSLAVAPWGLLAGSMAIEANLTPAEGQGLSAIVFAG
AAQLVAIGMLKGGAGFFSIIFTTLLLTSQHLLYGMSLRPVLSPLPGRWRIGLGFLLTDEFFALASQHDRRNF
NRWYALGVGLTFYIAWNLFTLAGILLGRSIPGLEHLGLDFSIAATFIALVAPLVRNVPTLVCVATSLFCSVL
FSHWQWSSALVLAGLAGMAAGFVCNKLYREAPWSGQ*
AnnotationID:3112GeneID:3104
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:58
Gene Name:
Confidence Code:3
GeneProduct:putative branched-chain amino acid transport protein AzlC
Cell Localization:()
Synonyms:azlC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative branched-chain amino acid permease
Functional Category Confidence Code:5
COGs:COG1296,pfam03591
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67998.1|AE016432_7 (AE016783) branched-chain amino acid transport protein AzlC
           [Pseudomonas putida KT2440]
          Length = 230

 Score =  358 bits (920), Expect = 1e-98
 Identities = 176/221 (79%), Positives = 198/221 (89%)

>gb|AAO07519.1|AE016810_22 (AE016810) Predicted branched-chain amino acid permease [Vibrio
           vulnificus CMCP6]
          Length = 237

 Score =  239 bits (611), Expect = 8e-63
 Identities = 114/217 (52%), Positives = 159/217 (73%)

Structural Features:
COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) 
[Amino acid transport and metabolism]
CD-Length = 238 residues,  99.2% aligned
Score =  177 bits (451), Expect = 9e-46
Identities = 95/239 (39%), Positives = 128/239 (53%), Gaps = 5/239 (2%)

pfam03591, AzlC, AzlC protein.
CD-Length = 161 residues, 100.0% aligned
Score =  152 bits (386), Expect = 3e-38
Identities = 83/161 (51%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Genomic Context:
Comment:
ReferenceID:6211
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23353
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32664
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3104_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3104

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4995 PA2039_tr translation of PA2039 252 99.60 99.99 0 1310.0
140733 gb|AAG05427.1|AE004630_4 (AE004630) hypothetical protein PA2039 [Pseudomonas aeruginosa PAO1] 252 99.60 99.99 0 1310.0
140734 gb|AAN67998.1|AE016432_7 (AE016783) branched-chain amino acid transport protein AzlC [Pseudomonas putida KT2440] 257 69.26 78.59 32 911.0
140735 gb|AAO07519.1|AE016810_22 (AE016810) Predicted branched-chain amino acid permease [Vibrio vulnificus CMCP6] 253 47.43 66.00 17 604.0
140736 dbj|BAC97147.1| (AP005348) predicted branched-chain amino acid permease [Vibrio vulnificus YJ016] 259 46.33 64.86 25 598.0
GC ORFID: 46106How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2039Glimmer Score:
Start: 1549893Stop: 1549135
Length: 759
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2039 translation of PA2039Homolog Bit Score 509.0
Other Homologs: t_PA2039 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCTGCTGGCATGCTGGACCGACGTTCACCACCGCCATGCCCCCATGACTGCCCACGACCTGCCCCGC
CAAGCCTTTCTCCGCGGTGCCGTCGCCATCCTCCCATTGTCCCTGGCCGTCGCGCCCTGGGGGCTGCTGGCG
GGATCGATGGCCATCGAAGCCAACCTTACCCCGGCCGAGGGCCAGGGCCTGTCCGCCATCGTCTTCGCCGGC
GCCGCCCAGTTGGTGGCGATCGGCATGCTCAAGGGCGGTGCCGGGTTCTTTTCGATCATCTTCACCACCCTC
CTCCTGACCTCGCAGCACCTGCTCTACGGCATGAGCTTGCGGCCGGTCCTGTCGCCTCTGCCGGGACGCTGG
CGGATCGGCCTGGGCTTCCTGCTCACCGACGAGTTCTTCGCCCTCGCCAGCCAGCACGACCGGCGCAACTTC
AACCGCTGGTACGCCCTCGGCGTCGGCCTGACCTTCTATATCGCCTGGAACCTGTTCACCCTCGCCGGCATC
CTGCTTGGCCGCAGCATTCCCGGTCTCGAACACCTGGGCCTGGATTTCTCCATCGCCGCCACCTTCATCGCG
CTGGTCGCGCCACTGGTGCGCAACGTACCGACGCTGGTCTGCGTGGCCACCTCGCTGTTCTGCTCGGTGCTG
TTCAGCCACTGGCAATGGAGTTCGGCGCTGGTCCTCGCCGGTCTCGCCGGGATGGCCGCCGGTTTCGTCTGC
AACAAGCTGTATCGGGAGGCGCCATGGTCTGGGCAGTGA