ViewGene
Locus Name:
GeneID:
Location:

GeneID:3103
TrivialName: PA14_54230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54230
PAO1 Ortholog Locus:PA0777
Sequence Length:753
Protein Length:250
Start: 4812771
Stop: 4813523
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04166.1|AE004512_9 (AE004512) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 247/250 (98%), Positives = 248/250 (99%)
Sequence:
ATGCTCCGCGCCTCCTTCGTCCTGCTCGCCCTGTCCTGCGCCGCTCCTCTGCCCTCGCTGGCCGAACCGTTG
CGCTTCGCAGGCGACGACGGCTGCCCCTACCTGTGCCCTGGCACGCCGCAGCGGCCCGGCTACCTGGTCGAG
GCGCTCAGCCAGGTCCTTCGGGAGCCACCGCACTTCGACAGCCTGCCCTGGCCGCGCGCCGTGCAGATGGTC
CGCGACGGCCATCGCGACGGCCTGGTCGGCGCCTATGGACTCGACGGCCTGCGGGTCGGCAGCGAGCCCATC
GGCTGGGTCGGGCTGGCCTTCTACACCCGCCACGACAGCGACTGGCGCTACTCCGGCGATGCATCCCTGCTC
GGCCAGCGCCTGGGCCTCGCCCAGGGCTACGTGAACAATCCGCGCTTCGAAGCCTGGCGCAGCCAGGCCGGC
GACGACGACCTGCACCTGCAGGTCCTCGGCGGCGAGCGCGTGCTGCCGCGCAACCTGCAGAAACTGCTGCTC
GGCCGCATCGACGTGCTATTGGAAGACCGCGACATCATCGAGCACTACCTGGAGCATCATCCGCAGCTCGCC
GGACAGGTCCGCCGCGCTGGCGAACTGCCCGGGCGGCAGCCGCTGCACGTCGGCCTCAGTCCGCACCTGCCG
GAGGTCGACGCGCGTCTCGCGGAACTCGACGAAGGGCTGCGCCAACTGCGTCGCGAAGGCACCCTGAAGGTC
CTCGGCGAGCGCTATAGGCTTTCTTTCGAATGA
Translation:
MLRASFVLLALSCAAPLPSLAEPLRFAGDDGCPYLCPGTPQRPGYLVEALSQVLREPPHFDSLPWPRAVQMV
RDGHRDGLVGAYGLDGLRVGSEPIGWVGLAFYTRHDSDWRYSGDASLLGQRLGLAQGYVNNPRFEAWRSQAG
DDDLHLQVLGGERVLPRNLQKLLLGRIDVLLEDRDIIEHYLEHHPQLAGQVRRAGELPGRQPLHVGLSPHLP
EVDARLAELDEGLRQLRREGTLKVLGERYRLSFE*
AnnotationID:3111GeneID:3103
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0777
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
      CD-Length = 275 residues,  78.5% aligned
      Score = 62.0 bits (149), Expect = 1e-10






   
Genomic Context:






   
Comment:


















    ReferenceID:6209




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23351




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3103
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4994
                           PA0777_tr
                           translation of PA0777
                           250
                           98.80
                           99.20
                           0
                           1311.0
     

     
     
140732
                           gb|AAG04166.1|AE004512_9
                           (AE004512) hypothetical protein PA0777 [Pseudomonas aeruginosa PAO1]
                           250
                           98.80
                           99.20
                           0
                           1311.0
     

     






      

          
GC ORFID: 46105How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0777Glimmer Score: 

          
Start: 141136Stop: 140384

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0777 translation of PA0777Homolog Bit Score 509.0

          
Other Homologs:  t_PA0777 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCCGCGCCTCCTTCGTCCTGCTCGCCCTGTCCTGCGCCGCTCCTCTGCCCTCGCTGGCCGAACCGTTG 
CGCTTCGCAGGCGACGACGGCTGCCCCTACCTGTGCCCTGGCACGCCGCAGCGGCCCGGCTACCTGGTCGAG 
GCGCTCAGCCAGGTCCTTCGGGAGCCACCGCACTTCGACAGCCTGCCCTGGCCGCGCGCCGTGCAGATGGTC 
CGCGACGGCCATCGCGACGGCCTGGTCGGCGCCTATGGACTCGACGGCCTGCGGGTCGGCAGCGAGCCCATC 
GGCTGGGTCGGGCTGGCCTTCTACACCCGCCACGACAGCGACTGGCGCTACTCCGGCGATGCATCCCTGCTC 
GGCCAGCGCCTGGGCCTCGCCCAGGGCTACGTGAACAATCCGCGCTTCGAAGCCTGGCGCAGCCAGGCCGGC 
GACGACGACCTGCACCTGCAGGTCCTCGGCGGCGAGCGCGTGCTGCCGCGCAACCTGCAGAAACTGCTGCTC 
GGCCGCATCGACGTGCTATTGGAAGACCGCGACATCATCGAGCACTACCTGGAGCATCATCCGCAGCTCGCC 
GGACAGGTCCGCCGCGCTGGCGAACTGCCCGGGCGGCAGCCGCTGCACGTCGGCCTCAGTCCGCACCTGCCG 
GAGGTCGACGCGCGTCTCGCGGAACTCGACGAAGGGCTGCGCCAACTGCGTCGCGAAGGCACCCTGAAGGTC 
CTCGGCGAGCGCTATAGGCTTTCTTTCGAATGA