ViewGene

Locus Name:
GeneID:
Location:

GeneID:3101
TrivialName: PA14_38500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38500
PAO1 Ortholog Locus:PA2010
Sequence Length:804
Protein Length:267
Start: 3435308
Stop: 3434505
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05398.1|AE004627_6 (AE004627) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 267/267 (100%), Positives = 267/267 (100%)
Sequence:
ATGGAAAAGAACAGCAGTCCCGCCGAAACCTCCGGCAAGCAGAAGGTCCGCTCCGCCGAAGTCGGTACCGAT
ATCCTCAAGGCCCTCGCCGAACTCTCCCCGGCGACCTCGCTGTCGCGCCTGGCGGAGCATGTGGGGATGCCG
GCGAGCAAGGTCCATCGCTATCTGCAGGCATTGATCGCCAGCGGCTTCGCGGTCCAGGACGCCTCCACCAAT
CATTACTCGCTGGGGCGCGAGGCGCTGCGCGTGGGCCTGGCGGCGCTGGACAGCATGGACGTGCTGAAGAGC
GCCGCCGCGCCGCTGGCCGAGCTGCGCGACGTGCTCAACGAGACCTGCTTCCTCGCCGTCTGGGGCAACCGT
GGAGCCACCGTGGTACAGGTGGAACAGGCGGTGCGCGCGGTGACGGTGGTCACCCAGGTCGGCTCGGTGCTG
CCGCTGCTCGGTTCGTCCACCGGCCTGGTGTTCGCCGCGTTCCTGCCGGAACGCGAGGTGGCCGAGCTGCGC
GAGGAAGAGTTGGCCGGGCGCGCCGACCATCCGCTGGCCGACCCGGCGGCCTATGCGGTGCTGCTGGAGGGC
ATCCGCGCGCGCGGCCTGCATGCGATCCATGGGCTGCTGATGCCTGGGGTGGAAGCGCTCTCGGCGCCGGTG
TTCGATGCCCGCGGGCGGGTGGCGGCGGTGCTCACGGTGGTCGGCCCGGCGAGCATCTTCCAGGCCGAGGAG
CAGGGGCCGGCGGCGGAACGGCTGCTTGCGACGACTCGGGCTATCAGTTGGCGGATGGGGTATGACGGCACC
CAGGGTGGATGA
Translation:
MEKNSSPAETSGKQKVRSAEVGTDILKALAELSPATSLSRLAEHVGMPASKVHRYLQALIASGFAVQDASTN
HYSLGREALRVGLAALDSMDVLKSAAAPLAELRDVLNETCFLAVWGNRGATVVQVEQAVRAVTVVTQVGSVL
PLLGSSTGLVFAAFLPEREVAELREEELAGRADHPLADPAAYAVLLEGIRARGLHAIHGLLMPGVEALSAPV
FDARGRVAAVLTVVGPASIFQAEEQGPAAERLLATTRAISWRMGYDGTQGG*
AnnotationID:3109GeneID:3101
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 19:07:19
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, IclR family
Cell Localization:()
Synonyms:PA2010
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1414,pfam01614
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70195.1|AE016659_1 (AE016791) transcriptional regulator, IclR family [Pseudomonas
           putida KT2440]
          Length = 277

 Score =  373 bits (957), Expect = e-103
 Identities = 196/263 (74%), Positives = 220/263 (83%), Gaps = 5/263 (1%)

>gb|AAO57027.1| (AE016868) transcriptional regulator, IclR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 263

 Score =  281 bits (720), Expect = 2e-75
 Identities = 154/259 (59%), Positives = 192/259 (74%), Gaps = 4/259 (1%)

Structural Features:
COG1414, IclR, Transcriptional regulator [Transcription]
CD-Length = 246 residues, 100.0% aligned
Score =  183 bits (467), Expect = 2e-47
Identities = 95/246 (38%), Positives = 123/246 (50%), Gaps = 1/246 (0%)

pfam01614, IclR, Bacterial transcriptional regulator.
CD-Length = 188 residues, 100.0% aligned
Score =  101 bits (254), Expect = 8e-23
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 3/188 (1%)
Genomic Context:
Comment:
ReferenceID:6205
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23347
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32713
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3101_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3101

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4992 PA2010_tr translation of PA2010 267 99.99 99.99 0 1314.0
140724 gb|AAG05398.1|AE004627_6 (AE004627) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 267 99.99 99.99 0 1314.0
140725 gb|AAN70195.1|AE016659_1 (AE016791) transcriptional regulator, IclR family [Pseudomonas putida KT2440] 283 69.96 78.44 22 959.0
140726 gb|AAO57027.1| (AE016868) transcriptional regulator, IclR family [Pseudomonas syringae pv. tomato str. DC3000] 270 58.14 72.59 10 720.0
140727 emb|CAD13830.1| (AL646058) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] 304 35.52 53.61 46 481.0
GC ORFID: 46103How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2010Glimmer Score:
Start: 1518603Stop: 1519406
Length: 804
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2010 translation of PA2010Homolog Bit Score 510.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene8161 (ORF: BLASTX 288.0), t_PA2010 (ORF: GLIMMER)
GC ORF Sequence
ATGGAAAAGAACAGCAGTCCCGCCGAAACCTCCGGCAAGCAGAAGGTCCGCTCCGCCGAAGTCGGTACCGAT
ATCCTCAAGGCCCTCGCCGAACTCTCCCCGGCGACCTCGCTGTCGCGCCTGGCGGAGCATGTGGGGATGCCG
GCGAGCAAGGTCCATCGCTATCTGCAGGCATTGATCGCCAGCGGCTTCGCGGTCCAGGACGCCTCCACCAAT
CATTACTCGCTGGGGCGCGAGGCGCTGCGCGTGGGCCTGGCGGCGCTGGACAGCATGGACGTGCTGAAGAGC
GCCGCCGCGCCGCTGGCCGAGCTGCGCGACGTGCTCAACGAGACCTGCTTCCTCGCCGTCTGGGGCAACCGT
GGAGCCACCGTGGTACAGGTGGAACAGGCGGTGCGCGCGGTGACGGTGGTCACCCAGGTCGGCTCGGTGCTG
CCGCTGCTCGGTTCGTCCACCGGCCTGGTGTTCGCCGCGTTCCTGCCGGAACGCGAGGTGGCCGAGCTGCGC
GAGGAAGAGTTGGCCGGGCGCGCCGACCATCCGCTGGCCGACCCGGCGGCCTATGCGGTGCTGCTGGAGGGC
ATCCGCGCGCGCGGCCTGCATGCGATCCATGGGCTGCTGATGCCTGGGGTGGAAGCGCTCTCGGCGCCGGTG
TTCGATGCCCGCGGGCGGGTGGCGGCGGTGCTCACGGTGGTCGGCCCGGCGAGCATCTTCCAGGCCGAGGAG
CAGGGGCCGGCGGCGGAACGGCTGCTTGCGACGACTCGGGCTATCAGTTGGCGGATGGGGTATGACGGCACC
CAGGGTGGATGA