ViewGene
Locus Name:
GeneID:
Location:

GeneID:3100
TrivialName: PA14_48590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48590
PAO1 Ortholog Locus:PA1216
Sequence Length:747
Protein Length:248
Start: 4320187
Stop: 4320933
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04605.1|AE004551_9 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 248/248 (100%), Positives = 248/248 (100%)
Sequence:
ATGAAGCAGTTCGACAAGCACGCAGACGCCTACAACGTGGTCCGCGGCAAGATCGCCTATCCGGATTCGCTC
TACCGCAACCTCGCCGAACGCGCCCCGGCACGCGAAGCGGCGCTGGACATCGGCTGCGGCAACGGCGTCTCG
ACCGTCCGCCTGCAACCCTGGTTCCGCTACGTGGAAGGCAGCGACCTGGGCGAGGCGCTGATCGCCAAGGCC
CGCGAGAACTACCCGGAGATCCGCTTCAGCGTGTCGCCGGCGGAAACCTTCGCGCCGCAACGCCGCTTCGAC
CTGGTCACCAGCGCCACCTCCTTCTACTGGATGGACCGCAAGCAGGTGCTGACGCGCATGGCCGACTGGCTG
ACCCCCGGCGGGCTGTTCTGCGCCTACAAGTACGACTTCCCGATCGCCTACGGGCCGCTGCGCGACTTCATC
GAGCACGAACTGGTGAACAAGTGGGCCAAACACCGTGATCCGCGCCTGACCCGCTATGACGACACCCTGGAG
ATCATGGGCAGTTGCCCGCACCTGCGCGACTGCCGCCGCGAAGTGTTCGCCAACATCATCTTCCTCAGCCCG
GAGGAGGTCGCGCTGTTCTTCCTCTCCACCAGCTACGTGACCCGCTACATCGAGCAGGAAGGCGGCGAAGAC
TACGCCGACCGCTTCATCGCCGCGGTGCGCGAGATCGAGAGCGCGCCGCAGGTGGCGGTGAACTTCGACATC
CACGCCTTCACCGCGCTGAATCGCTGA
Translation:
MKQFDKHADAYNVVRGKIAYPDSLYRNLAERAPAREAALDIGCGNGVSTVRLQPWFRYVEGSDLGEALIAKA
RENYPEIRFSVSPAETFAPQRRFDLVTSATSFYWMDRKQVLTRMADWLTPGGLFCAYKYDFPIAYGPLRDFI
EHELVNKWAKHRDPRLTRYDDTLEIMGSCPHLRDCRREVFANIIFLSPEEVALFFLSTSYVTRYIEQEGGED
YADRFIAAVREIESAPQVAVNFDIHAFTALNR*
AnnotationID:3108GeneID:3100
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 06:06:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1216
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6203




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23345




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37554




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3100_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3100
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4991
                           PA1216_tr
                           translation of PA1216
                           248
                           99.99
                           99.99
                           0
                           1314.0
     

     
     
140723
                           gb|AAG04605.1|AE004551_9
                           (AE004551) hypothetical protein PA1216 [Pseudomonas aeruginosa PAO1]
                           248
                           99.99
                           99.99
                           0
                           1314.0
     

     






      

          
GC ORFID: 46102How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1216Glimmer Score: 

          
Start: 633721Stop: 632975

          
Length: 747


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1216 translation of PA1216Homolog Bit Score 510.0

          
Other Homologs:  t_PA1216 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCAGTTCGACAAGCACGCAGACGCCTACAACGTGGTCCGCGGCAAGATCGCCTATCCGGATTCGCTC 
TACCGCAACCTCGCCGAACGCGCCCCGGCACGCGAAGCGGCGCTGGACATCGGCTGCGGCAACGGCGTCTCG 
ACCGTCCGCCTGCAACCCTGGTTCCGCTACGTGGAAGGCAGCGACCTGGGCGAGGCGCTGATCGCCAAGGCC 
CGCGAGAACTACCCGGAGATCCGCTTCAGCGTGTCGCCGGCGGAAACCTTCGCGCCGCAACGCCGCTTCGAC 
CTGGTCACCAGCGCCACCTCCTTCTACTGGATGGACCGCAAGCAGGTGCTGACGCGCATGGCCGACTGGCTG 
ACCCCCGGCGGGCTGTTCTGCGCCTACAAGTACGACTTCCCGATCGCCTACGGGCCGCTGCGCGACTTCATC 
GAGCACGAACTGGTGAACAAGTGGGCCAAACACCGTGATCCGCGCCTGACCCGCTATGACGACACCCTGGAG 
ATCATGGGCAGTTGCCCGCACCTGCGCGACTGCCGCCGCGAAGTGTTCGCCAACATCATCTTCCTCAGCCCG 
GAGGAGGTCGCGCTGTTCTTCCTCTCCACCAGCTACGTGACCCGCTACATCGAGCAGGAAGGCGGCGAAGAC 
TACGCCGACCGCTTCATCGCCGCGGTGCGCGAGATCGAGAGCGCGCCGCAGGTGGCGGTGAACTTCGACATC 
CACGCCTTCACCGCGCTGAATCGCTGA