ViewGene
Locus Name:
GeneID:
Location:

GeneID:310
TrivialName: PA14_29760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29760
PAO1 Ortholog Locus:PA2654
Sequence Length:2145
Protein Length:714
Start: 2578448
Stop: 2576304
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06042.1|AE004694_5 (AE004694) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 710/714 (99%), Positives = 712/714 (99%)
Sequence:
ATGTTCCTTCGCCGCCTGTCCATCCAATGGAAGATCACCCTGCTGGCAGGCCTCTGCCTGCTCGGCGTGGTC
GCCTTGCTGGTCGGCCTTTCGGTCTACCGCATGCAGCACAGCAGCGTACTGGTGAAAAGCGCCAGTACGCAG
ATGCTCGACGAATCGGCGCGCCTGCGCCTGGAAGCCCGCGGGGAATTGCAGGCGTTGCGCATCCAGCGCTAT
TTCATGGATGCCTTCCAGTACGGCAAGGGTTTCTCCCGGCAGATCCTGTTCCTCCGCGACCAGGCGCAGAAG
CGCTTCCTCGACGCCTACGACCTGCGCGAAGACCTGACCCGCCAGGTGCGTACCGCGCTCGCCGCCAATCCC
GAGGTGCTCGGCCTGTACGTGGTCTTCGAACCCAACGCACTGGACGGCAAGGACGAACTGTTCGTCGACCAG
CCCGCCCTGGGCAGCAACGACAAGGGACGCTTCTCCCTGTACTGGGCGCAGGCCACGCCGGGACAGCTGGAG
TCCGAGTCGATGGTCGAGTCCGAACTCGCCGACACCAGCAGCGGGCCCAGCGGCGCGGCCTACAACGCCTGG
TACACCTGCCCGAAGGAAAGCGCTCAACCCTGCGTGCTCGATCCCTACTTCGACAAGGTCGGCGAGCGCCAA
CTGCTGATGACCAGCATCGCCTTCCCCCTCGAACTGGATGGCAAGGTGATCGGCGTGATGGGCCTGGACATC
AACCTGAGCAATCTGCAGGCGCTCAGCGAACAGGGCAACCGCGAACTCTACGACGGCGTTGGCCAGGTCGGC
ATCCTCAGCCCGGCCGGGCTGTTCGCCGGCAACAGCCGCGACGCTGGCCTGCTCGGCAAGAACCTGGCCAAG
GCGGATCCGCAGCACGCCGACGAACTCCTGCAACTGCTGGCCGCCGGCAAGAGCCAATTGTTCAACGAGAAC
GACGACCTCAAGGTGCTGCAACCGTTGCAGCCGATTCCCGGCGCCAAGCCCTGGGGCGTGCTCCTCGAAGTG
CCGAAGAGCGCCCTGCTCGGCCCGGCCCTGGCGCTGGAGCGGCAACTGGACGACATGCGCCGCGAAGGCACC
TGGGTCGAACTGGGCCTCGGCCTCGGCGCCGCGGTGCTCGGCCTGCTGGTGCTGTGGCTGAGCGCCCGCGGC
GTGACCCGGCCGATCCTCGGCGTCGCCCACATGCTGCGCGACATCGCCAGCGGCGAAGGCGACCTGACCCAG
CGTCTGCCGCACACCGGGCGCGACGAGCTGGGCGAACTGGCCGGTTGGTTCAACCGTTTCCTCGACAAGCTG
CAGCCGATCATCCGCGACGTGAAGGTCTCGGTGCGCGATGCGCGCAGTACCGCCGACCAGTCGGCGGCGATT
TCCAGCCAGACCAGCGCCGGCATGCAGCAGCAGTTCCGCGAGATCGATCAGGTCGCCACCGCATCCCACGAG
ATGACCGCCACTGCCCAGGACGTCGCCCGTAGCGCCGCCCAGGCCGCCGACGCCGCGCGCGGTGCCGACCAG
GCGACCCGCGACGGTCTGGCGCTGATCGACCGCACCACCCAGAGCATCGACAGCCTGGCCGCCAACCTGACC
AGCGCCATGGGCCAGGTCGAGCAACTGGCCAGCAGCAGCGAGGAAATCGGTTCGGTGCTGGAAGTGATCCGC
GCCATCGCCGAGCAGACCAACCTGCTGGCGCTCAACGCGGCCATCGAGGCGGCCCGCGCCGGCGACGCCGGC
CGCGGCTTCGCGGTGGTCGCCGACGAAGTGCGCAACCTCGCCCGGCGCACCCAGGACTCGGTGGAACAGATC
CGCGGGGTGATCGAAGGCCTGCAACAGGGCACCCGCGACGTGGTCGACGCCATGCACGGCAGCCATCGCCAG
GCCCAGGGCAGCGTCGAGCAGGTGGATGAAGCGGTGGCCGCGCTGCAACGGATCGGCGAGGCGGTGACGGTG
ATCAACGACATGAATCTACAGATTGCCAGCGCCGCCGAGGAACAGAGCTCGGTAGCCGAGGAGATCAACCGC
AATGTCGCGGCGATCCGTGACGTCACCGAGTCGCTGTCGAGCCAGGCCGAGGAATCGGCCCAGGTCAGTCAG
TCGCTGAACCGCCTGGCCAACCACCAGCAGGGCCTGATGGAACAGTTCAAGGCCTGA
Translation:
MFLRRLSIQWKITLLAGLCLLGVVALLVGLSVYRMQHSSVLVKSASTQMLDESARLRLEARGELQALRIQRY
FMDAFQYGKGFSRQILFLRDQAQKRFLDAYDLREDLTRQVRTALAANPEVLGLYVVFEPNALDGKDELFVDQ
PALGSNDKGRFSLYWAQATPGQLESESMVESELADTSSGPSGAAYNAWYTCPKESAQPCVLDPYFDKVGERQ
LLMTSIAFPLELDGKVIGVMGLDINLSNLQALSEQGNRELYDGVGQVGILSPAGLFAGNSRDAGLLGKNLAK
ADPQHADELLQLLAAGKSQLFNENDDLKVLQPLQPIPGAKPWGVLLEVPKSALLGPALALERQLDDMRREGT
WVELGLGLGAAVLGLLVLWLSARGVTRPILGVAHMLRDIASGEGDLTQRLPHTGRDELGELAGWFNRFLDKL
QPIIRDVKVSVRDARSTADQSAAISSQTSAGMQQQFREIDQVATASHEMTATAQDVARSAAQAADAARGADQ
ATRDGLALIDRTTQSIDSLAANLTSAMGQVEQLASSSEEIGSVLEVIRAIAEQTNLLALNAAIEAARAGDAG
RGFAVVADEVRNLARRTQDSVEQIRGVIEGLQQGTRDVVDAMHGSHRQAQGSVEQVDEAVAALQRIGEAVTV
INDMNLQIASAAEEQSSVAEEINRNVAAIRDVTESLSSQAEESAQVSQSLNRLANHQQGLMEQFKA*
AnnotationID:320GeneID:310
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 17:05:09
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA2654
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative methyl-accepting chemotaxis transducer
Functional Category Confidence Code:5
COGs:smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69158.1|AE016549_7 (AE016787) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 714

 Score =  928 bits (2398), Expect = 0.0
 Identities = 478/713 (67%), Positives = 585/713 (82%)

>gb|AAF95007.1| (AE004261) methyl-accepting chemotaxis protein [Vibrio cholerae]
          Length = 706

 Score =  457 bits (1175), Expect = e-127
 Identities = 269/714 (37%), Positives = 416/714 (58%), Gaps = 13/714 (1%)






 
Structural Features:
smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues, 100.0% aligned
Score =  216 bits (552), Expect = 6e-57
Identities = 101/262 (38%), Positives = 168/262 (64%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  99.2% aligned
Score =  197 bits (501), Expect = 5e-51
Identities = 103/249 (41%), Positives = 156/249 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:623




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17765




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36352




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:310_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:310
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
502
                           PA2654_tr
                           translation of PA2654
                           714
                           99.43
                           99.71
                           0
                           3517.0
     

     
     
25434
                           gb|AAG06042.1|AE004694_5
                           (AE004694) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           714
                           99.43
                           99.71
                           0
                           3517.0
     

     
     
25435
                           gb|AAN69158.1|AE016549_7
                           (AE016787) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           714
                           66.94
                           81.93
                           0
                           2398.0
     

     
     
25436
                           gb|AAN66852.1|AE016313_11
                           (AE016778) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           714
                           62.32
                           76.33
                           26
                           2174.0
     

     
     
25437
                           gb|AAN67556.1|AE016385_2
                           (AE016781) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           718
                           57.52
                           73.95
                           6
                           1956.0
     

     






      

          
GC ORFID: 43312How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2654Glimmer Score: 

          
Start: 2375478Stop: 2377622

          
Length: 2145


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2654 translation of PA2654Homolog Bit Score 1359.0

          
Other Homologs:  t_PA2652 (ORF: BLASTX 288.0), t_PA2561 (ORF: BLASTX 251.0), t_PA2920 (ORF: BLASTX 250.0), psyr_15may02_Scaffold10_revised_gene1717 (ORF: BLASTX 246.0), t_PA2867 (ORF: BLASTX 241.0), psyr_15may02_Scaffold1_revised_gene618 (ORF: BLASTX 238.0), psyr_15may02_Scaffold9_revised_gene7996 (ORF: BLASTX 234.0), psyr_15may02_Scaffold1_revised_gene392 (ORF: BLASTX 234.0), psyr_15may02_Scaffold13_revised_gene2252 (ORF: BLASTX 233.0), psyr_15may02_Scaffold1_revised_gene610 (ORF: BLASTX 231.0), psyr_15may02_Scaffold1_revised_gene1081 (ORF: BLASTX 227.0), psyr_15may02_Scaffold8_revised_gene7520 (ORF: BLASTX 226.0), t_PA1561 (ORF: BLASTX 223.0), psyr_15may02_Scaffold5_revised_gene6405 (ORF: BLASTX 204.0), t_PA2654 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCTTCGCCGCCTGTCCATCCAATGGAAGATCACCCTGCTGGCAGGCCTCTGCCTGCTCGGCGTGGTC 
GCCTTGCTGGTCGGCCTTTCGGTCTACCGCATGCAGCACAGCAGCGTACTGGTGAAAAGCGCCAGTACGCAG 
ATGCTCGACGAATCGGCGCGCCTGCGCCTGGAAGCCCGCGGGGAATTGCAGGCGTTGCGCATCCAGCGCTAT 
TTCATGGATGCCTTCCAGTACGGCAAGGGTTTCTCCCGGCAGATCCTGTTCCTCCGCGACCAGGCGCAGAAG 
CGCTTCCTCGACGCCTACGACCTGCGCGAAGACCTGACCCGCCAGGTGCGTACCGCGCTCGCCGCCAATCCC 
GAGGTGCTCGGCCTGTACGTGGTCTTCGAACCCAACGCACTGGACGGCAAGGACGAACTGTTCGTCGACCAG 
CCCGCCCTGGGCAGCAACGACAAGGGACGCTTCTCCCTGTACTGGGCGCAGGCCACGCCGGGACAGCTGGAG 
TCCGAGTCGATGGTCGAGTCCGAACTCGCCGACACCAGCAGCGGGCCCAGCGGCGCGGCCTACAACGCCTGG 
TACACCTGCCCGAAGGAAAGCGCTCAACCCTGCGTGCTCGATCCCTACTTCGACAAGGTCGGCGAGCGCCAA 
CTGCTGATGACCAGCATCGCCTTCCCCCTCGAACTGGATGGCAAGGTGATCGGCGTGATGGGCCTGGACATC 
AACCTGAGCAATCTGCAGGCGCTCAGCGAACAGGGCAACCGCGAACTCTACGACGGCGTTGGCCAGGTCGGC 
ATCCTCAGCCCGGCCGGGCTGTTCGCCGGCAACAGCCGCGACGCTGGCCTGCTCGGCAAGAACCTGGCCAAG 
GCGGATCCGCAGCACGCCGACGAACTCCTGCAACTGCTGGCCGCCGGCAAGAGCCAATTGTTCAACGAGAAC 
GACGACCTCAAGGTGCTGCAACCGTTGCAGCCGATTCCCGGCGCCAAGCCCTGGGGCGTGCTCCTCGAAGTG 
CCGAAGAGCGCCCTGCTCGGCCCGGCCCTGGCGCTGGAGCGGCAACTGGACGACATGCGCCGCGAAGGCACC 
TGGGTCGAACTGGGCCTCGGCCTCGGCGCCGCGGTGCTCGGCCTGCTGGTGCTGTGGCTGAGCGCCCGCGGC 
GTGACCCGGCCGATCCTCGGCGTCGCCCACATGCTGCGCGACATCGCCAGCGGCGAAGGCGACCTGACCCAG 
CGTCTGCCGCACACCGGGCGCGACGAGCTGGGCGAACTGGCCGGTTGGTTCAACCGTTTCCTCGACAAGCTG 
CAGCCGATCATCCGCGACGTGAAGGTCTCGGTGCGCGATGCGCGCAGTACCGCCGACCAGTCGGCGGCGATT 
TCCAGCCAGACCAGCGCCGGCATGCAGCAGCAGTTCCGCGAGATCGATCAGGTCGCCACCGCATCCCACGAG 
ATGACCGCCACTGCCCAGGACGTCGCCCGTAGCGCCGCCCAGGCCGCCGACGCCGCGCGCGGTGCCGACCAG 
GCGACCCGCGACGGTCTGGCGCTGATCGACCGCACCACCCAGAGCATCGACAGCCTGGCCGCCAACCTGACC 
AGCGCCATGGGCCAGGTCGAGCAACTGGCCAGCAGCAGCGAGGAAATCGGTTCGGTGCTGGAAGTGATCCGC 
GCCATCGCCGAGCAGACCAACCTGCTGGCGCTCAACGCGGCCATCGAGGCGGCCCGCGCCGGCGACGCCGGC 
CGCGGCTTCGCGGTGGTCGCCGACGAAGTGCGCAACCTCGCCCGGCGCACCCAGGACTCGGTGGAACAGATC 
CGCGGGGTGATCGAAGGCCTGCAACAGGGCACCCGCGACGTGGTCGACGCCATGCACGGCAGCCATCGCCAG 
GCCCAGGGCAGCGTCGAGCAGGTGGATGAAGCGGTGGCCGCGCTGCAACGGATCGGCGAGGCGGTGACGGTG 
ATCAACGACATGAATCTACAGATTGCCAGCGCCGCCGAGGAACAGAGCTCGGTAGCCGAGGAGATCAACCGC 
AATGTCGCGGCGATCCGTGACGTCACCGAGTCGCTGTCGAGCCAGGCCGAGGAATCGGCCCAGGTCAGTCAG 
TCGCTGAACCGCCTGGCCAACCACCAGCAGGGCCTGATGGAACAGTTCAAGGCCTGA