Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG05232.1| AE004610_5 (AE004610) methionine synthase [Pseudomonas aeruginosa PAO1]
Identities = 1233/1234 (99%), Positives = 1233/1234 (99%)
Sequence:
ATGTCCAGCCCGCTCACCGATCGCAGCGCCCGCCTGCAAGCCCTCCAGCACGCCCTCAGGGAACGTATCCTG
ATCCTCGATGGCGGCATGGGCACCATGATCCAGAGCTACAAGCTGGAAGAAGCCGACTACCGCGGCGAGCGC
TTCGCCGACTGGCCGAGCGACGTGAAAGGCAACAACGACCTCTTGCTGCTCAGCCGCCCGGACGTGATCCAG
GCCATCGAGAATGCCTACCTCGACGCCGGCGCCGACATCCTCGAGACCAATACCTTCAACGCCACCCAGGTG
TCCCAGGCCGACTACGGCATGCAGTCGCTGGCCTACGAACTCAACGTCGAAGGGGCGCGCCTGGCTCGCCAG
GTGGCGGACGCGAAGACCGCCGAGACCCCGGACAAGCCGCGCTTCGTCGCCGGCGTGCTCGGCCCGACCAGC
CGCACCTGCTCGATTTCCCCGGACGTGAACAACCCCGGCTACCGCAACGTCACCTTCGACGAGCTGGTGGAG
AACTACGTCGAGGCGACCCGCGGCCTGATCGAGGGCGGCGCCGACCTGATCCTGATCGAGACCATCTTCGAC
ACCCTCAATGCCAAGGCGGCGATATTCGCCGTCCAGGGCGTGTTCGAGGAACTCGGCGTGGAGCTGCCGATC
ATGATCTCCGGGACCATCACCGACGCCTCCGGCCGCACCCTGTCGGGCCAGACCACCGAGGCCTTCTGGAAC
TCGGTGCGGCATGCCCGGCCGATCTCGGTAGGCCTGAACTGCGCCCTCGGCGCCAAGGAATTGCGGCCGTAC
ATCGAGGAACTGTCGACCAAGGCCGACACTCATGTCTCGGCCCACCCCAACGCCGGCCTGCCGAACGCCTTC
GGCGAATACGACGAATCGCCGGCGGAAATGGCCGTGGTGGTCGAGGAATTCGCCGCCGCCGGCTTCCTCAAT
ATCGTCGGCGGCTGCTGCGGCACCACCCCGGCGCACATCGAGGCGATCGCCAAGGCAGTGGCCAAGTACCCG
CCGCGGGCCATCCCGGAGATTCCCCGGGCCTGTCGCCTGTCCGGCCTGGAGCCGTTCACCATCGACCGCAGC
TCGCTGTTCGTCAACGTCGGCGAGCGCACCAACATCACCGGTTCGGCCAAGTTCGCCCGGCTGATCCGCGAG
GAAAACTACGCGGAAGCTCTCGAGGTCGCCCAGCAGCAGGTGGAAGCCGGCGCCCAGGTGATCGACATCAAC
ATGGACGAAGGCATGCTGGACTCGAAGGCGGCCATGGTCACCTTCCTCAACCTGATCGCCTCCGAGCCCGAC
ATCTCGCGCGTGCCGATCATGATCGACTCCTCCAAGTGGGAAGTGATCGAGGCCGGCCTGAAGTGCATCCAG
GGCAAGGGCATCGTCAACTCGATCTCGATGAAGGAAGGCGTCGAGGCCTTCAAGCACCATGCCCGCCTGTGC
AAGCGCTACGGCGCCGCGGTGGTGGTGATGGCCTTCGACGAGGACGGCCAGGCCGACACCCAGGCGCGCAAG
GAAGAAATCTGCAAGCGCTCCTACGACATCCTGGTCGACGAAGTCGGCTTCCCACCGGAAGACATCATCTTC
GATGCGAACATCTTCGCCATCGCCACCGGCATCGAGGAACACAACAACTACGCGGTCGATTTCATCAACGCC
TGCGCCTACATCCGCGACAACCTCCCCTACGCCCTGAGTTCGGGCGGGGTGTCCAACGTGTCCTTCTCGTTC
CGCGGCAACAACCCGGTACGCGAGGCGATCCACTCGGTGTTCCTCTACTACGCGATCCGCAACGGCCTGACC
ATGGGCATCGTCAACGCCGGCCAGCTGGAAATCTACGACGAGATTCCGAAAGCGCTGCGCGACCGGGTCGAG
GACGTGGTGCTCAACCGCACGCCCGAGGCCACCGAGGCCCTGCTGGCGATCGCCGACGACTACAAGGGCGGC
GGCGCGGTCAAGGAGGCCGAGGACGAGGAATGGCGCAGCTACAGTGTCGAGAAGCGCCTCGAGCATGCGCTG
GTCAAGGGCATCACCACCTGGATCGTCGAGGACACCGAGGAATGCCGCCAGCAGTGTGCGCGTCCCATCGAG
GTCATCGAAGGTCCGCTGATGTCCGGGATGAACGTGGTCGGCGACCTGTTCGGCGCCGGCAAGATGTTCCTC
CCGCAGGTGGTCAAGTCCGCGCGAGTGATGAAGCAGGCGGTGGCCCACCTGATTCCCTTCATCGAGGCGGAG
AAAGGCGACAAGCCGGAAGCCAAGGGCAAGATCCTGATGGCCACGGTGAAGGGCGACGTGCACGACATCGGC
AAGAACATCGTCGGCGTGGTGCTCGGCTGCAACGGCTATGACGTGGTCGACCTCGGCGTGATGGTGCCGGCG
GAGAAGATCCTGCAGACCGCCATCGCCGAGAAATGCGACATCATCGGCCTGTCTGGCCTGATCACGCCGTCG
CTGGACGAGATGGTCCACGTCGCCAAGGAAATGCAGCGGCAGAATTTCCAGTTGCCGCTGATGATCGGCGGC
GCCACTACCTCGAAGGCGCATACCGCGGTGAAGATCGATCCGCAGTACAGCAACGACGCGGTGGTCTACGTC
ACCGACGCCTCGCGCGCGGTAGGCGTGGCCACCAGCCTGCTGTCCAAGGAGCTGAAGGCCGACTACGTGGCC
CGCACCCGCGCCGACTACGCGGTGGTCCGCGAACGCACGGCCAACCGCAGCGCCCGCACCGAGCGGCTGAGC
TACGAACAGGCGATCGCCAACAAGCCGGCGTTCGACTGGGCCGGCTACCAGGCGCCGACGCCTTCCTTCACC
GGCGTCAGGGTGCTCGACGAGATCGACCTCGCGGTGCTCGCCGAGTACATCGACTGGACGCCGTTCTTCATT
TCCTGGGACCTGGCCGGCAAGTACCCGCGCATCCTCACCGACGAGGTGGTCGGCgagGCCGCCACCTCGTTG
TTCAATGACGCCCAGGCGATGCTGAAGAAGCTGATCGACGAGAAGCTGATCAAGGCCCGTGCGGTGTTCGGC
TTCTGGCCGGCCAACCAGGTCGAGCACGACGACCTGGAGGTCTACGGCGCCGAtgGCGAGACCCTCGCCACc
ctGCACCACCTGCGGCAGCAGACGATCAAGCCGGACGGCAAGCCGAACCTGTCGCTGGCCGATTTCGTCGCG
CCGAAGGAAAGCGGCGTGCGCGACtaCATCGGCGGCTTCATCACCACCGCCGGGATCGGCGCCGAGGAAGTG
GCCAAGGCGTACGAAGCCAAGGGCGACGACTACAACAGCATCATGGTCAAGGCGCTCGCCGACCGCCTCGCC
GAAGCCTGCGCCGAGTGGCTGCACGAGCGGGTGCGCAAGGAGTACTGGGGCTACGCCCGCGACGAACACCTC
GACAACGAGGCCTTGATCAAGGAGCAATACGTCGGCATCCGCCCGGCACCGGGCTACCCGGCCTGCCCCGAC
CATACCGAGAAAGGCACTCTGTTCGAACTGCTCGATCCGCAGGGCCTGTCCGGCGTCAGCCTGACCGAGCAC
TACGCGATGTTCCCGGCCGCGGCGGTCAGCGGTTGGTATTTCGCCCACCCGCAGGCGCAGTACTTCGCGGTC
GGCAAGATCGACAAGGACCAGGTGGAACGCTACAGCCAGCGCAAGGGCCAGGAAGCCAGCGTCAGCGAGCGC
TGGCTGGCGCCGAACCTTGGCTACGATGACTGA
Translation:
MSSPLTDRSARLQALQHALRERILILDGGMGTMIQSYKLEEADYRGERFADWPSDVKGNNDLLLLSRPDVIQ
AIENAYLDAGADILETNTFNATQVSQADYGMQSLAYELNVEGARLARQVADAKTAETPDKPRFVAGVLGPTS
RTCSISPDVNNPGYRNVTFDELVENYVEATRGLIEGGADLILIETIFDTLNAKAAIFAVQGVFEELGVELPI
MISGTITDASGRTLSGQTTEAFWNSVRHARPISVGLNCALGAKELRPYIEELSTKADTHVSAHPNAGLPNAF
GEYDESPAEMAVVVEEFAAAGFLNIVGGCCGTTPAHIEAIAKAVAKYPPRAIPEIPRACRLSGLEPFTIDRS
SLFVNVGERTNITGSAKFARLIREENYAEALEVAQQQVEAGAQVIDINMDEGMLDSKAAMVTFLNLIASEPD
ISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEAFKHHARLCKRYGAAVVVMAFDEDGQADTQARK
EEICKRSYDILVDEVGFPPEDIIFDANIFAIATGIEEHNNYAVDFINACAYIRDNLPYALSSGGVSNVSFSF
RGNNPVREAIHSVFLYYAIRNGLTMGIVNAGQLEIYDEIPKALRDRVEDVVLNRTPEATEALLAIADDYKGG
GAVKEAEDEEWRSYSVEKRLEHALVKGITTWIVEDTEECRQQCARPIEVIEGPLMSGMNVVGDLFGAGKMFL
PQVVKSARVMKQAVAHLIPFIEAEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDVVDLGVMVPA
EKILQTAIAEKCDIIGLSGLITPSLDEMVHVAKEMQRQNFQLPLMIGGATTSKAHTAVKIDPQYSNDAVVYV
TDASRAVGVATSLLSKELKADYVARTRADYAVVRERTANRSARTERLSYEQAIANKPAFDWAGYQAPTPSFT
GVRVLDEIDLAVLAEYIDWTPFFISWDLAGKYPRILTDEVVGEAATSLFNDAQAMLKKLIDEKLIKARAVFG
FWPANQVEHDDLEVYGADGETLATLHHLRQQTIKPDGKPNLSLADFVAPKESGVRDYIGGFITTAGIGAEEV
AKAYEAKGDDYNSIMVKALADRLAEACAEWLHERVRKEYWGYARDEHLDNEALIKEQYVGIRPAPGYPACPD
HTEKGTLFELLDPQGLSGVSLTEHYAMFPAAAVSGWYFAHPQAQYFAVGKIDKDQVERYSQRKGQEASVSER
WLAPNLGYDD*
AnnotationID:41 GeneID:31
Modification Date/Time:
2005-04-28 14:02:27
GeneProduct: methionine synthase
Cell Localization Confidence Code: 5
Functional Category: (2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name: 5-methyltetrahydrofolate--homocysteine methyltransferase
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: >gb|AAN67988.1| AE016431_4 (AE016782) 5-methyltetrahydrofolate--homocysteine methyltransferase
[Pseudomonas putida KT2440]
Length = 1235
Score = 2185 bits (5661), Expect = 0.0
Identities = 1089/1234 (88%), Positives = 1158/1234 (93%), Gaps = 5/1234 (0%)
>gb|AAO56233.1| (AE016865) 5-methyltetrahydrofolate--homocysteine methyltransferase
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 1239
Score = 2122 bits (5498), Expect = 0.0
Identities = 1058/1239 (85%), Positives = 1134/1239 (91%), Gaps = 9/1239 (0%)
>gb|AAL23012.1| (AE008895) B12-dependent homocysteine-N5-methyltetrahydrofolate
transmethylase [Salmonella typhimurium LT2]
Length = 1256
Score = 1640 bits (4248), Expect = 0.0
Identities = 837/1229 (68%), Positives = 986/1229 (80%), Gaps = 9/1229 (0%)
Structural Features: COG1410 , MetH, Methionine synthase I, cobalamin-binding domain
[Amino acid transport and metabolism]
CD-Length = 842 residues, 100.0% aligned
Score = 1192 bits (3086), Expect = 0.0
Identities = 534/867 (61%), Positives = 623/867 (71%), Gaps = 26/867 (2%)
COG0646 , MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain
[Amino acid transport and metabolism]
CD-Length = 311 residues, 100.0% aligned
Score = 432 bits (1113), Expect = 1e-121
Identities = 204/330 (61%), Positives = 243/330 (73%), Gaps = 22/330 (6%)
pfam02965 , Met_synt_B12, Vitamin B12 dependent methionine synthase, activation domain.
CD-Length = 291 residues, 99.7% aligned
Score = 354 bits (909), Expect = 4e-98
Identities = 165/294 (56%), Positives = 195/294 (66%), Gaps = 11/294 (3%)