ViewGene
Locus Name:
GeneID:
Location:

GeneID:3098
TrivialName: PA14_72600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72600
PAO1 Ortholog Locus:PA5502
Sequence Length:789
Protein Length:262
Start: 6467552
Stop: 6468340
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08887.1|AE004962_11 (AE004962) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 262/262 (100%), Positives = 262/262 (100%)
Sequence:
ATGTCGTCCTTCTTTCGCCTGCTGTCCGTCCTGGCGGCGGCGCTGCTGGTCAGCGCCTGCCAGGGCAATGCG
TCGTCGCAACCGACGCCGGTGGTCGCGCCCCAGGCGCAGCCCGCCGATCCCTACGCCGAACTGCAGGAAACC
CTGGCCGCCGGCAAGCTCGAACAGGCCGAGCAACAATGGCTGGCCCTGCGCAGCGCAGCCGCCGGCGACGAG
CGCGTCGAAGCATTCCGCCGCCAGTTGGCCGAGGCCTACATGCAGCGCGGGGAAACCGCGCTGCGCCAAGGA
GACCTCAACACCGCCACCAGTGCCCTCGGCCATGCCCGCGGACTGATGCCCAAGGCGCCGGCGCTGACCGCC
GGGCTGGACGGTGCGATCAACCGCGCCAAGGTCGATCCCGCCCGTGCCGAGCAGGCCCGACGCATGCAGCAG
GCGGCCCAGCAGCAGATGCAGCAGATCATCCAGACGCCGCCCGACGGCGAACTGAAGCCGCTGCCCGGCGCT
CCCCACCTGATCGATCCGCAAGCGGCCAGCAGCGCCGTGCCCCTGCCGATGCTCGACGGCACCGGCCAGGGC
GGCCTCGGTGCGGTGCTCGACGCGGTGGCCGCGGATGTCGTCGCCTACCGTTGCAGGGTGCATATCGAAGTG
CGCCGGGACAGCGACTATCCGCTGGTTTCCGACCAGCTCCTGGCGCGGGTGAAGAAGCTCTCACCCGATTTC
GACCTGCATCTCAGCCATGTCGTACAGGCCGACAAGCCGACCCGATTGATACTTACCCCCCGGAATTGA
Translation:
MSSFFRLLSVLAAALLVSACQGNASSQPTPVVAPQAQPADPYAELQETLAAGKLEQAEQQWLALRSAAAGDE
RVEAFRRQLAEAYMQRGETALRQGDLNTATSALGHARGLMPKAPALTAGLDGAINRAKVDPARAEQARRMQQ
AAQQQMQQIIQTPPDGELKPLPGAPHLIDPQAASSAVPLPMLDGTGQGGLGAVLDAVAADVVAYRCRVHIEV
RRDSDYPLVSDQLLARVKKLSPDFDLHLSHVVQADKPTRLILTPRN*
AnnotationID:3106GeneID:3098
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:24
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA5502
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58690.1| (AE016875) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 238

 Score =  159 bits (401), Expect = 2e-38
 Identities = 100/255 (39%), Positives = 150/255 (58%), Gaps = 26/255 (10%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6199




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23341




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33241




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3098_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3098
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4989
                           PA5502_tr
                           translation of PA5502
                           262
                           99.99
                           99.99
                           0
                           1314.0
     

     
     
140721
                           gb|AAG08887.1|AE004962_11
                           (AE004962) hypothetical protein PA5502 [Pseudomonas aeruginosa PAO1]
                           262
                           99.99
                           99.99
                           0
                           1314.0
     

     






      

          
GC ORFID: 46100How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5502Glimmer Score: 

          
Start: 5731241Stop: 5732029

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5502 translation of PA5502Homolog Bit Score 510.0

          
Other Homologs:  t_PA5502 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTCCTTCTTTCGCCTGCTGTCCGTCCTGGCGGCGGCGCTGCTGGTCAGCGCCTGCCAGGGCAATGCG 
TCGTCGCAACCGACGCCGGTGGTCGCGCCCCAGGCGCAGCCCGCCGATCCCTACGCCGAACTGCAGGAAACC 
CTGGCCGCCGGCAAGCTCGAACAGGCCGAGCAACAATGGCTGGCCCTGCGCAGCGCAGCCGCCGGCGACGAG 
CGCGTCGAAGCATTCCGCCGCCAGTTGGCCGAGGCCTACATGCAGCGCGGGGAAACCGCGCTGCGCCAAGGA 
GACCTCAACACCGCCACCAGTGCCCTCGGCCATGCCCGCGGACTGATGCCCAAGGCGCCGGCGCTGACCGCC 
GGGCTGGACGGTGCGATCAACCGCGCCAAGGTCGATCCCGCCCGTGCCGAGCAGGCCCGACGCATGCAGCAG 
GCGGCCCAGCAGCAGATGCAGCAGATCATCCAGACGCCGCCCGACGGCGAACTGAAGCCGCTGCCCGGCGCT 
CCCCACCTGATCGATCCGCAAGCGGCCAGCAGCGCCGTGCCCCTGCCGATGCTCGACGGCACCGGCCAGGGC 
GGCCTCGGTGCGGTGCTCGACGCGGTGGCCGCGGATGTCGTCGCCTACCGTTGCAGGGTGCATATCGAAGTG 
CGCCGGGACAGCGACTATCCGCTGGTTTCCGACCAGCTCCTGGCGCGGGTGAAGAAGCTCTCACCCGATTTC 
GACCTGCATCTCAGCCATGTCGTACAGGCCGACAAGCCGACCCGATTGATACTTACCCCCCGGAATTGA