ViewGene
Locus Name:
GeneID:
Location:

GeneID:3097
TrivialName: PA14_64840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64840
PAO1 Ortholog Locus:PA4907
Sequence Length:762
Protein Length:253
Start: 5778015
Stop: 5777254
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08292.1|AE004903_10 (AE004903) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 253/253 (100%), Positives = 253/253 (100%)
Sequence:
ATGTCGTCCACCCTGTTCATCACCGGCGCCACCTCAGGCTTCGGCGAAGCCTGCGCCCGTCGTTTCGCCGAG
GCCGGCTGGTCGCTGGTGCTCACCGGCCGTCGCGAGGAGCGTCTGCAGGCCCTGGCCGGCGAGCTTTCGGCG
AAGACCCGGGTGCTGCCGCTGACCCTGGACGTGCGCGACCGCGCGGCGATGAGCGCGGCCGTGGACAACCTG
CCGGAAGAGTTCGCCACCCTGCGCGGCCTGATCAACAACGCCGGCCTGGCGCTGGGCACCGACCCGGCGCAG
TCCTGCGACCTGGACGACTGGGACACCATGGTCGACACCAACATCAAGGGCCTGCTCTACAGCACGCGCCTG
CTGCTGCCGCGGCTGATCGCCCACGGCGCCGGGGCGAGCATCGTCAACCTGGGTTCGGTGGCCGGCAAGTGG
CCCTATCCGGGTAGCCATGTCTACGGCGGCACCAAGGCCTTCGTCGAGCAATTCTCCCTGAACCTGCGTTGC
GACCTGCAGGGCACCGGGGTGCGCGTGACCAACCTCGAGCCGGGGCTGTGCGAGAGCGAGTTCTCCCTGGTC
CGCTTCGGCGGCGACCAGGCGCGCTACGACAAGACCTACGCCGGGGCCCATCCGATCCAGCCGGAAGACATC
GCCGAGACCATCTTCTGGATCATGAACCAGCCCGCCCACCTGAACATCAACAGCCTCGAGATCATGCCGGTG
AGCCAGTCCTGGGCCGGCTTCGCCATCCACCGCGAAAGCTGA
Translation:
MSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNL
PEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW
PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDI
AETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIHRES*
AnnotationID:3105GeneID:3097
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 14:02:19
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA4907
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative short-chain alcohol dehydrogenase
Functional Category Confidence Code:5
COGs:COG4221,pfam00106
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58342.1| (AE016873) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 254

 Score =  419 bits (1078), Expect = e-117
 Identities = 203/251 (80%), Positives = 228/251 (90%)

>gb|AAN70431.1|AE016684_10 (AE016792) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas putida KT2440]
          Length = 254

 Score =  413 bits (1062), Expect = e-115
 Identities = 200/251 (79%), Positives = 224/251 (89%)

>gb|AAM43095.1| (AE012507) oxidoreductase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 251

 Score =  288 bits (736), Expect = 3e-77
 Identities = 148/253 (58%), Positives = 184/253 (72%), Gaps = 3/253 (1%)








 
Structural Features:
COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity
CD-Length = 246 residues,  98.4% aligned
Score =  319 bits (819), Expect = 2e-88
Identities = 137/245 (55%), Positives = 168/245 (68%), Gaps = 4/245 (1%)

pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues,  96.8% aligned
Score =  165 bits (420), Expect = 4e-42
Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 12/241 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23339




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35124




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3097_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3097
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4988
                           PA4907_tr
                           translation of PA4907
                           253
                           99.99
                           99.99
                           0
                           1314.0
     

     
     
140664
                           gb|AAG08292.1|AE004903_10
                           (AE004903) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           253
                           99.99
                           99.99
                           0
                           1314.0
     

     
     
140665
                           gb|AAO58342.1|
                           (AE016873) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           254
                           79.92
                           89.76
                           1
                           1077.0
     

     
     
140666
                           gb|AAN70431.1|AE016684_10
                           (AE016792) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas putida KT2440]
                           254
                           78.74
                           88.18
                           1
                           1062.0
     

     
     
140669
                           gb|AAM38756.1|
                           (AE012041) oxidoreductase [Xanthomonas axonopodis pv. citri str. 306]
                           254
                           59.44
                           72.44
                           4
                           738.0
     

     






      

          
GC ORFID: 46099How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4907Glimmer Score: 

          
Start: 5041696Stop: 5040935

          
Length: 762


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4907 translation of PA4907Homolog Bit Score 510.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3457 (ORF: BLASTX 416.0), t_PA4907 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTCCACCCTGTTCATCACCGGCGCCACCTCAGGCTTCGGCGAAGCCTGCGCCCGTCGTTTCGCCGAG 
GCCGGCTGGTCGCTGGTGCTCACCGGCCGTCGCGAGGAGCGTCTGCAGGCCCTGGCCGGCGAGCTTTCGGCG 
AAGACCCGGGTGCTGCCGCTGACCCTGGACGTGCGCGACCGCGCGGCGATGAGCGCGGCCGTGGACAACCTG 
CCGGAAGAGTTCGCCACCCTGCGCGGCCTGATCAACAACGCCGGCCTGGCGCTGGGCACCGACCCGGCGCAG 
TCCTGCGACCTGGACGACTGGGACACCATGGTCGACACCAACATCAAGGGCCTGCTCTACAGCACGCGCCTG 
CTGCTGCCGCGGCTGATCGCCCACGGCGCCGGGGCGAGCATCGTCAACCTGGGTTCGGTGGCCGGCAAGTGG 
CCCTATCCGGGTAGCCATGTCTACGGCGGCACCAAGGCCTTCGTCGAGCAATTCTCCCTGAACCTGCGTTGC 
GACCTGCAGGGCACCGGGGTGCGCGTGACCAACCTCGAGCCGGGGCTGTGCGAGAGCGAGTTCTCCCTGGTC 
CGCTTCGGCGGCGACCAGGCGCGCTACGACAAGACCTACGCCGGGGCCCATCCGATCCAGCCGGAAGACATC 
GCCGAGACCATCTTCTGGATCATGAACCAGCCCGCCCACCTGAACATCAACAGCCTCGAGATCATGCCGGTG 
AGCCAGTCCTGGGCCGGCTTCGCCATCCACCGCGAAAGCTGA