ViewGene
Locus Name:
GeneID:
Location:

GeneID:3096
TrivialName: PA14_12590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12590
PAO1 Ortholog Locus:PA3964
Sequence Length:786
Protein Length:261
Start: 1081194
Stop: 1080409
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07351.1|AE004814_6 (AE004814) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 256/261 (98%), Positives = 258/261 (98%)
Sequence:
ATGCCGACCCGCAGGAAGTGGTCGGCAAGGAAACCGTCAGTTGACGCTGTAGCCGCGCCCGCTCAGGCAGGC
GGCCATGGCCCGGCGGTAGCCGTTGGCGACCTCGGCGGCCGGCGCGTAGGTCGCCCCCGCCGGGTCGAAGCC
GCTCTCGACCACCGCCCAGCGGTGGCACTCGTAGCGGTCGCGGCTCTGCTGGTCGGGCCCCTGGCCGCGCGC
GGGGTAGGCCACCACGTCGTAGCTGGCGGCCGGCCCGCTGACCGGATAAACGGGTCCCGCTGCCCGCGGCGG
CGGGCTGACCACTTCGTACTCGCGGGTGTCGGCATGCCACAGGTAGTAAGTGCCGGCGGCAAGGAAGTACAG
CACGCTGCCCAGCCAGACCTGCTCCGCATAGGGCGGCAGGCTGCGGACGCGCACCCCGCGGGGCGGCACGAC
CAGCACATAGCGCGGGCCGTCGGGTCGGTACCAGTAGCCGTCGTGGAAGAAATACTCGCCGCCGCGATAGGG
CACCCGCAGGTGTCCGCGCGGCAAGGCATCCACCATCCGGCCCGGACGCCAGTCGGGATGCGGTCCCCAACT
GCCGCCATGCGCTTCGCCGCGGCCAGGTCCCGGTTGTCCGTGGGCAACACCGCGCTCGCCGCCGGGTCCGCC
GCGTCCCCCTCGGCCGTCGTCGGCCTGCGCCTGGACGCACAGGCTCAGCGAGAGAGCGCCCACCCCGAGCAT
TCGCCACCATCCACCGTTCATCGTCTGCCTCGCCCCGGGCCTGGTCGCCCGGCCACGTTCGAATGA
Translation:
MPTRRKWSARKPSVDAVAAPAQAGGHGPAVAVGDLGGRRVGRPRRVEAALDHRPAVALVAVAALLVGPLAAR
GVGHHVVAGGRPADRINGSRCPRRRADHFVLAGVGMPQVVSAGGKEVQHAAQPDLLRIGRQAADAHPAGRHD
QHIARAVGSVPVAVVEEILAAAIGHPQVSARQGIHHPARTPVGMRSPTAAMRFAAARSRLSVGNTALAAGSA
ASPSAVVGLRLDAQAQRESAHPEHSPPSTVHRLPRPGPGRPATFE*
AnnotationID:3104GeneID:3096
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 18:06:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3964
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6195




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23337




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3096
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4987
                           PA3964_tr
                           translation of PA3964
                           261
                           98.08
                           98.85
                           0
                           1313.0
     

     
     
140663
                           gb|AAG07351.1|AE004814_6
                           (AE004814) hypothetical protein PA3964 [Pseudomonas aeruginosa PAO1]
                           261
                           98.08
                           98.85
                           0
                           1313.0
     

     






      

          
GC ORFID: 46098How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3964Glimmer Score: 

          
Start: 3872744Stop: 3873529

          
Length: 786


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3964 translation of PA3964Homolog Bit Score 510.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCGACCCGCAGGAAGTGGTCGGCAAGGAAACCGTCAGTTGACGCTGTAGCCGCGCCCGCTCAGGCAGGC 
GGCCATGGCCCGGCGGTAGCCGTTGGCGACCTCGGCGGCCGGCGCGTAGGTCGCCCCCGCCGGGTCGAAGCC 
GCTCTCGACCACCGCCCAGCGGTGGCACTCGTAGCGGTCGCGGCTCTGCTGGTCGGGCCCCTGGCCGCGCGC 
GGGGTAGGCCACCACGTCGTAGCTGGCGGCCGGCCCGCTGACCGGATAAACGGGTCCCGCTGCCCGCGGCGG 
CGGGCTGACCACTTCGTACTCGCGGGTGTCGGCATGCCACAGGTAGTAAGTGCCGGCGGCAAGGAAGTACAG 
CACGCTGCCCAGCCAGACCTGCTCCGCATAGGGCGGCAGGCTGCGGACGCGCACCCCGCGGGGCGGCACGAC 
CAGCACATAGCGCGGGCCGTCGGGTCGGTACCAGTAGCCGTCGTGGAAGAAATACTCGCCGCCGCGATAGGG 
CACCCGCAGGTGTCCGCGCGGCAAGGCATCCACCATCCGGCCCGGACGCCAGTCGGGATGCGGTCCCCAACT 
GCCGCCATGCGCTTCGCCGCGGCCAGGTCCCGGTTGTCCGTGGGCAACACCGCGCTCGCCGCCGGGTCCGCC 
GCGTCCCCCTCGGCCGTCGTCGGCCTGCGCCTGGACGCACAGGCTCAGCGAGAGAGCGCCCACCCCGAGCAT 
TCGCCACCATCCACCGTTCATCGTCTGCCTCGCCCCGGGCCTGGTCGCCCGGCCACGTTCGAATGA