ViewGene
Locus Name:
GeneID:
Location:

GeneID:3093
TrivialName: PA14_32460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32460
PAO1 Ortholog Locus:PA2488
Sequence Length:768
Protein Length:255
Start: 2823116
Stop: 2822349
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05876.1|AE004676_8 (AE004676) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 252/255 (98%), Positives = 252/255 (98%), Gaps = 1/255 (0%)
Sequence:
ATGCTTCCGGCCCCCCTGCCCGTCCCGCTCTTCGCCCTGCGCATCGACCGCGCAGCCAGCCGCACGGCCTCC
CACCGCCATGCCTGCGGCCAGCTCTACTGCCTGGAGCGCGGCCTTCTGGTGGTCGAGGACGAGCATGGCCGC
CAGGCCCTGCCTCCGCGCCAGATCGCCTGGATCCCACCGGGTCACCCACACTCGGCGCACTCCCACGGCAGC
CTGGCGGGCTGGAGCGCCTACCTCGCCGCCGAACACTGCCGCGACCTGCCCCGGCACCCCGGCGTGCTCGCC
TGCTCGGCTTTCGTGGCGCTGATCGTCGAACGCGCCACCCGCTGGCCGCCGACCGGCTCCGCCTGGAGCACC
GAACGCGAGAACCTGCTGCGCGTGCTGCTGGACGAACTGCGCCACGCCGTGCCCCAGCGGACCCGCCTGCCC
TATCCGGGAGATTCGCGCCTGCGCAGGATCGCCGAGGCATTGCTGGCCAACCCCGGCGATCCGCGGCCGGCG
GCCGAATGGGCGCGCTGGGCGGGCCTCAGCAGCCGTAGCCTGAGCCGGCTGTTCGGCGCCGAGACCGGCATG
AGCTTCGCGCAATGGCGGCAACTGGCGCGACTGCACGCGGCCGTCGAACGGCTGGCAGCGGGCCAGGCGGTC
GGCGAGGTCGCCTGGTCGCTCGGCTACGAAAGCCCGAGCAGCTTCGCCAGTGCCTTCCGCGCAGTATTCGGC
GAGACGCCGTCCGGCTATTCCAGTCGCGCCAACGAAGCGCTAGCCTGA
Translation:
MLPAPLPVPLFALRIDRAASRTASHRHACGQLYCLERGLLVVEDEHGRQALPPRQIAWIPPGHPHSAHSHGS
LAGWSAYLAAEHCRDLPRHPGVLACSAFVALIVERATRWPPTGSAWSTERENLLRVLLDELRHAVPQRTRLP
YPGDSRLRRIAEALLANPGDPRPAAEWARWAGLSSRSLSRLFGAETGMSFAQWRQLARLHAAVERLAAGQAV
GEVAWSLGYESPSSFASAFRAVFGETPSGYSSRANEALA*
AnnotationID:3101GeneID:3093
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2488
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM40694.1| (AE012239) transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 287

 Score =  200 bits (509), Expect = 6e-51
 Identities = 107/231 (46%), Positives = 127/231 (54%), Gaps = 3/231 (1%)








 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  97.6% aligned
Score = 86.1 bits (212), Expect = 4e-18
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 1/124 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6189




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23331




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33030




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3093_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3093
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4984
                           PA2488_tr
                           translation of PA2488
                           255
                           98.82
                           98.82
                           1
                           1319.0
     

     
     
140563
                           gb|AAG05876.1|AE004676_8
                           (AE004676) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           255
                           98.82
                           98.82
                           1
                           1319.0
     

     
     
140564
                           gb|AAM40694.1|
                           (AE012239) transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           290
                           42.06
                           49.65
                           38
                           510.0
     

     
     
140567
                           gb|AAQ61293.1|
                           (AE016922) probable transcriptional regulator AraC family [Chromobacterium violaceum ATCC 12472]
                           256
                           40.23
                           48.82
                           10
                           397.0
     

     
     
140565
                           gb|AAQ59499.1|
                           (AE016916) probable transcriptional regulator, AraC family [Chromobacterium violaceum ATCC 12472]
                           276
                           39.85
                           53.26
                           27
                           480.0
     

     






      

          
GC ORFID: 46095How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2488Glimmer Score: 

          
Start: 2130808Stop: 2131575

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2488 translation of PA2488Homolog Bit Score 511.0

          
Other Homologs:  t_PA2488 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTCCGGCCCCCCTGCCCGTCCCGCTCTTCGCCCTGCGCATCGACCGCGCAGCCAGCCGCACGGCCTCC 
CACCGCCATGCCTGCGGCCAGCTCTACTGCCTGGAGCGCGGCCTTCTGGTGGTCGAGGACGAGCATGGCCGC 
CAGGCCCTGCCTCCGCGCCAGATCGCCTGGATCCCACCGGGTCACCCACACTCGGCGCACTCCCACGGCAGC 
CTGGCGGGCTGGAGCGCCTACCTCGCCGCCGAACACTGCCGCGACCTGCCCCGGCACCCCGGCGTGCTCGCC 
TGCTCGGCTTTCGTGGCGCTGATCGTCGAACGCGCCACCCGCTGGCCGCCGACCGGCTCCGCCTGGAGCACC 
GAACGCGAGAACCTGCTGCGCGTGCTGCTGGACGAACTGCGCCACGCCGTGCCCCAGCGGACCCGCCTGCCC 
TATCCGGGAGATTCGCGCCTGCGCAGGATCGCCGAGGCATTGCTGGCCAACCCCGGCGATCCGCGGCCGGCG 
GCCGAATGGGCGCGCTGGGCGGGCCTCAGCAGCCGTAGCCTGAGCCGGCTGTTCGGCGCCGAGACCGGCATG 
AGCTTCGCGCAATGGCGGCAACTGGCGCGACTGCACGCGGCCGTCGAACGGCTGGCAGCGGGCCAGGCGGTC 
GGCGAGGTCGCCTGGTCGCTCGGCTACGAAAGCCCGAGCAGCTTCGCCAGTGCCTTCCGCGCAGTATTCGGC 
GAGACGCCGTCCGGCTATTCCAGTCGCGCCAACGAAGCGCTAGCCTGA