ViewGene
Locus Name:
GeneID:
Location:

GeneID:3092
TrivialName: PA14_49820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49820
PAO1 Ortholog Locus:PA1125
Sequence Length:753
Protein Length:250
Start: 4431751
Stop: 4430999
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04514.1|AE004542_10 (AE004542) probable cobalamin biosynthetic protein [Pseudomonas aeruginosa PAO1]
Identities = 248/250 (99%), Positives = 250/250 (100%)
Sequence:
ATGCGCGCTGTCGTCGAACTGCTCGCCGGCGCCCGCCGCCTGGTGATCTTCACGGGCGCCGGGGTGTCGGCG
GAAAGCGGGATTCCCACCTTCCGCGATGCCCTTGGCGGTCTCTGGGCGCGCTACGATCCGGCGGCCCTGGCT
ACGCCCGCGGCCTTCGCCGACGATCCCGCGCTGGTCTGGGGCTGGTACGAGTGGCGCCGCCTGAAGGTGCTG
GGTGTCCAGCCGAATCCCGCGCACCGGGCGATCGCCGCGTTGAGCGGACGGATCGCCGACACCCGGTTGGTC
ACCCAGAACGTCGACGACCTGCATGAACGCGCCGGCAGCCGCGACGTCCTTCACCTGCATGGCAGCCTGCAC
GCGCCGCGTTGCGCGACCTGCGCGGCAGCCTACCGGGACGCCTTGCCCGATTCGGTCGAGCCGGAAGAGGGA
CGACGGATCGAGCCGCCGCGTTGTCCGGCCTGCGGCGGACAGGTCCGGCCGGGCGTGGTCTGGTTCGGCGAG
GCGCTGCCCGAGGCGGCGCTGCGCGAGGCTTTCGCCGCGGCCTGCGAGTGCGACCTGTTGCTCAGCGTCGGC
ACTTCCGGCGTGGTGCAGCCGGCGGCGCGGATACCCGGACTGGCGCTGGAACACGGTGCCAGCGTCGTGCAT
GTGAACCCGCAACCGGTGCGCACCCGCCATCCGCGCGAACACTGTCTCGTCGGTCCGGCCGGCGAGATGCTG
CCCGAACTGTTGCGCCGGGCGTTTCCCGGCTGA
Translation:
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVL
GVQPNPAHRAIAALSGRIADTRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCAAAYRDALPDSVEPEEG
RRIEPPRCPACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVH
VNPQPVRTRHPREHCLVGPAGEMLPELLRRAFPG*
AnnotationID:3100GeneID:3092
AnnotatorUID: danlee
Modification Date/Time: 2004-08-11 12:12:36
Gene Name:
Confidence Code:3
GeneProduct:probable cobalamin biosynthetic protein
Cell Localization:()
Synonyms:PA1125, cobB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0846
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Cobalamin biosynthesis 
Homology:






 
Structural Features:
COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription]

             CD-Length = 250 residues,  97.2% aligned
             Score =  282 bits (723), Expect = 2e-77






   
Genomic Context:






   
Comment:


















    ReferenceID:6187




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23329




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3092
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4983
                           PA1125_tr
                           translation of PA1125
                           250
                           99.20
                           99.99
                           0
                           1315.0
     

     
     
140536
                           gb|AAG04514.1|AE004542_10
                           (AE004542) probable cobalamin biosynthetic protein [Pseudomonas aeruginosa PAO1]
                           250
                           99.20
                           99.99
                           0
                           1315.0
     

     
     
140537
                           gb|AAN70966.1|AE016741_1
                           (AE016794) transcriptional regulator, Sir2 family [Pseudomonas putida KT2440]
                           265
                           50.94
                           62.64
                           18
                           634.0
     

     
     
140538
                           gb|AAO58121.1|
                           (AE016872) transcriptional regulator, Sir2 family [Pseudomonas syringae pv. tomato str. DC3000]
                           259
                           49.42
                           61.77
                           12
                           619.0
     

     
     
140539
                           emb|CAD14932.1|
                           (AL646063) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           267
                           49.06
                           59.17
                           38
                           609.0
     

     






      

          
GC ORFID: 46094How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1125Glimmer Score: 

          
Start: 522157Stop: 522909

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1125 translation of PA1125Homolog Bit Score 511.0

          
Other Homologs:  t_PA1125 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCTGTCGTCGAACTGCTCGCCGGCGCCCGCCGCCTGGTGATCTTCACGGGCGCCGGGGTGTCGGCG 
GAAAGCGGGATTCCCACCTTCCGCGATGCCCTTGGCGGTCTCTGGGCGCGCTACGATCCGGCGGCCCTGGCT 
ACGCCCGCGGCCTTCGCCGACGATCCCGCGCTGGTCTGGGGCTGGTACGAGTGGCGCCGCCTGAAGGTGCTG 
GGTGTCCAGCCGAATCCCGCGCACCGGGCGATCGCCGCGTTGAGCGGACGGATCGCCGACACCCGGTTGGTC 
ACCCAGAACGTCGACGACCTGCATGAACGCGCCGGCAGCCGCGACGTCCTTCACCTGCATGGCAGCCTGCAC 
GCGCCGCGTTGCGCGACCTGCGCGGCAGCCTACCGGGACGCCTTGCCCGATTCGGTCGAGCCGGAAGAGGGA 
CGACGGATCGAGCCGCCGCGTTGTCCGGCCTGCGGCGGACAGGTCCGGCCGGGCGTGGTCTGGTTCGGCGAG 
GCGCTGCCCGAGGCGGCGCTGCGCGAGGCTTTCGCCGCGGCCTGCGAGTGCGACCTGTTGCTCAGCGTCGGC 
ACTTCCGGCGTGGTGCAGCCGGCGGCGCGGATACCCGGACTGGCGCTGGAACACGGTGCCAGCGTCGTGCAT 
GTGAACCCGCAACCGGTGCGCACCCGCCATCCGCGCGAACACTGTCTCGTCGGTCCGGCCGGCGAGATGCTG 
CCCGAACTGTTGCGCCGGGCGTTTCCCGGCTGA