ViewGene
Locus Name:
GeneID:
Location:

GeneID:3091
TrivialName: PA14_52790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52790
PAO1 Ortholog Locus:PA0888
Sequence Length:780
Protein Length:259
Start: 4679425
Stop: 4678646
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04277.1|AE004523_5 (AE004523) arginine/ornithine binding protein AotJ [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGAAGAAGCTCGCACTTCTCGGCGCCCTGGCGCTGTCCGTGCTCTCCCTGCCCACTTTCGCCGCCGACAAG
CCGGTGCGCATCGGCATCGAGGCGGCCTATCCGCCGTTCTCGCTGAAGACCCCGGACGGCCAGCTGGCAGGC
TTCGACGTGGATATCGGCAATGCCCTCTGCGAAGAGATGAAGGTGCAGTGCAAGTGGGTCGAGCAGGAGTTC
GACGGCCTGATCCCGGCACTCAAGGTGCGCAAGATCGATGCGATCCTCTCGTCGATGACCATCACCGACGAG
CGCAAGCGTTCGGTCGACTTCACCAACAAGTACTACAACACCCCGGCGCGCTTCGTGATGAAGGAAGGCGCC
AGCCTCAACGATCCCAAGGCCGACCTGAAGGGCAAGAAGGCCGGCGTGCTGCGTGGCAGTACCGCCGACCGC
TACGCCTCCGCCGAACTGACCCCGGCCGGCGTCGAAGTGGTGCGCTACAACTCCCAGCAGGAAGCCAACATG
GACCTGGTGGCCGGTCGCCTCGACGCGGTGGTCGCCGATTCGGTGAACCTCGAAGATGGCTTCCTCAAGACC
GATGCCGGCAAGGGCTACGCCTTCGTCGGTCCGCAACTGACCGATGCCAAGTACTTCGGCGAAGGCGTCGGC
ATCGCCGTGCGCAAGGGCGATAGCGAGCTGGCCGGCAAGTTCAACGCGGCCATCGACGCGCTGCGCGCCAAC
GGCAAGTACAAGCAGATCCAGGACAAGTACTTCAGCTTCGACGTCTACGGTTCGAACTGA
Translation:
MKKLALLGALALSVLSLPTFAADKPVRIGIEAAYPPFSLKTPDGQLAGFDVDIGNALCEEMKVQCKWVEQEF
DGLIPALKVRKIDAILSSMTITDERKRSVDFTNKYYNTPARFVMKEGASLNDPKADLKGKKAGVLRGSTADR
YASAELTPAGVEVVRYNSQQEANMDLVAGRLDAVVADSVNLEDGFLKTDAGKGYAFVGPQLTDAKYFGEGVG
IAVRKGDSELAGKFNAAIDALRANGKYKQIQDKYFSFDVYGSN*
AnnotationID:3099GeneID:3091
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 16:04:35
Gene Name:aotJ
Confidence Code:1
GeneProduct:arginine/ornithine binding protein AotJ
Cell Localization:()
Synonyms:PA0888
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00497, smart00062, COG0834
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins. Score: 213, 3e-56
smart00062, PBPb, Bacterial periplasmic substrate-binding proteins. Score: 190, 3e-49
COG0834, HisJ, ABC-type amino acid transport/signal transduction... Score: 164






   
Genomic Context:
Arginine-ornithine transport locus, adjacent to arginine-ornithine catabolic locus






   
Comment:


















    ReferenceID:6185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23327




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31997




  
Author/Investigator(s):
        Nishijyo T, Park SM, Lu CD, Itoh Y, Abdelal AT.






  
Title:
        Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa.





  
PubMed:
        99008987


MedLine:
        




    
Source:
J Bacteriol. 1998 Nov;180(21):5559-66.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3091
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4979
                           PA0888_tr
                           translation of PA0888
                           259
                           99.99
                           99.99
                           0
                           1315.0
     

     
     
140463
                           gb|AAG04277.1|AE004523_5
                           (AE004523) arginine/ornithine binding protein AotJ [Pseudomonas aeruginosa PAO1]
                           259
                           99.99
                           99.99
                           0
                           1315.0
     

     
     
140464
                           gb|AAC71070.1|
                           (AF012537) arginine and ornithine binding protein [Pseudomonas aeruginosa]
                           259
                           99.99
                           99.99
                           0
                           1315.0
     

     
     
140466
                           gb|AAN70061.1|AE016645_7
                           (AE016790) basic amino acid ABC transporter, periplasmic basic amino acid-binding protein [Pseudomonas putida KT2440]
                           261
                           68.96
                           80.84
                           2
                           939.0
     

     
     
140465
                           gb|AAO55345.1|
                           (AE016862) arginine/ornithine ABC transporter, periplasmic arginine/ornithine-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           259
                           68.72
                           80.69
                           1
                           942.0
     

     






      

          
GC ORFID: 46093How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0888Glimmer Score: 

          
Start: 274482Stop: 275261

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0888 translation of PA0888Homolog Bit Score 511.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7808 (ORF: BLASTX 367.0), t_PA3865 (ORF: BLASTX 343.0), t_PA2923 (ORF: BLASTX 231.0), psyr_15may02_Scaffold5_revised_gene6099 (ORF: BLASTX 202.0), t_PA5153 (ORF: BLASTX 198.0), psyr_15may02_Scaffold6_revised_gene6951 (ORF: BLASTX 183.0), t_PA0888 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAAGCTCGCACTTCTCGGCGCCCTGGCGCTGTCCGTGCTCTCCCTGCCCACTTTCGCCGCCGACAAG 
CCGGTGCGCATCGGCATCGAGGCGGCCTATCCGCCGTTCTCGCTGAAGACCCCGGACGGCCAGCTGGCAGGC 
TTCGACGTGGATATCGGCAATGCCCTCTGCGAAGAGATGAAGGTGCAGTGCAAGTGGGTCGAGCAGGAGTTC 
GACGGCCTGATCCCGGCACTCAAGGTGCGCAAGATCGATGCGATCCTCTCGTCGATGACCATCACCGACGAG 
CGCAAGCGTTCGGTCGACTTCACCAACAAGTACTACAACACCCCGGCGCGCTTCGTGATGAAGGAAGGCGCC 
AGCCTCAACGATCCCAAGGCCGACCTGAAGGGCAAGAAGGCCGGCGTGCTGCGTGGCAGTACCGCCGACCGC 
TACGCCTCCGCCGAACTGACCCCGGCCGGCGTCGAAGTGGTGCGCTACAACTCCCAGCAGGAAGCCAACATG 
GACCTGGTGGCCGGTCGCCTCGACGCGGTGGTCGCCGATTCGGTGAACCTCGAAGATGGCTTCCTCAAGACC 
GATGCCGGCAAGGGCTACGCCTTCGTCGGTCCGCAACTGACCGATGCCAAGTACTTCGGCGAAGGCGTCGGC 
ATCGCCGTGCGCAAGGGCGATAGCGAGCTGGCCGGCAAGTTCAACGCGGCCATCGACGCGCTGCGCGCCAAC 
GGCAAGTACAAGCAGATCCAGGACAAGTACTTCAGCTTCGACGTCTACGGTTCGAACTGA