ViewGene

Locus Name:
GeneID:
Location:

GeneID:3090
TrivialName: PA14_07060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07060
PAO1 Ortholog Locus:PA0544
Sequence Length:744
Protein Length:247
Start: 612116
Stop: 611373
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03933.1|AE004490_13 (AE004490) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 244/247 (98%), Positives = 247/247 (100%)
Sequence:
ATGAAGATCCGCCTGCTGTCCGACCTCCACCACGAACATTTCGACGGGCGACGCCAACTGCCAGAGGTCGAG
GCCGACGTGGTGGTGCTGGCCGGCGATATCCACAGCCACCTGGAAGGCCTGCACTGGGCCCGCGAGACCTTC
GCCGACAGCGAGATCGTCTACGTCGCCGGCAACCATGAGTTCTACTCCTCGGAAATGACCGACCTGACCCAG
GCGATGCGCAATATCGCCCGGGCGCTGGATATCCACTTCCTGGAAAACGACGAAGCGCGGATCGGCCCGGCG
CGCTTCCTCGGCGCCACCCTGTGGACCGACTTCCAGCTCTATGGCGCGGACGgCTATGCGCCCGCCCATGAG
CTGGCCCTGCAATCGATGCCGGACTTCAGCTGCATCGACTGGTTCGGCGGCGACTTCACCCCCGAGCAGAGC
ATCGCCCTGCACCGAGCCTCGCGCGACTGGCTCGCCGAACAGCTGGCGCGGCCCCACGACGGCCCGACGCTG
GTGGTCAGCCACCACGCGCCCAGTGCGCTGTCGATCCCGCCGCAGTTCGTCGGCAACCCGCTGTCGCCAGCC
TTCGCTTCCAACCTCGACGAACTGCTGGCGCAGGCCGACTACTGGCTGCACGGTCACGTCCACGATGCCCTC
GACTACCGCATCGGCCGGGCACGGGTGCTGGCCAATCCGGGCGGCTATCCCCACGAGAGAGGCGGGTTCCGT
CCGGAATTCGTCTTCGAGGTCTGA
Translation:
MKIRLLSDLHHEHFDGRRQLPEVEADVVVLAGDIHSHLEGLHWARETFADSEIVYVAGNHEFYSSEMTDLTQ
AMRNIARALDIHFLENDEARIGPARFLGATLWTDFQLYGADGYAPAHELALQSMPDFSCIDWFGGDFTPEQS
IALHRASRDWLAEQLARPHDGPTLVVSHHAPSALSIPPQFVGNPLSPAFASNLDELLAQADYWLHGHVHDAL
DYRIGRARVLANPGGYPHERGGFRPEFVFEV*
AnnotationID:3098GeneID:3090
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0544
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6183
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23325
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3090

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4978 PA0544_tr translation of PA0544 247 98.78 99.99 0 1318.0
140462 gb|AAG03933.1|AE004490_13 (AE004490) hypothetical protein PA0544 [Pseudomonas aeruginosa PAO1] 247 98.78 99.99 0 1318.0
GC ORFID: 46092How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0544Glimmer Score:
Start: 6413458Stop: 6412715
Length: 744
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0544 translation of PA0544Homolog Bit Score 512.0
Other Homologs: t_PA0544 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGATCCGCCTGCTGTCCGACCTCCACCACGAACATTTCGACGGGCGACGCCAACTGCCAGAGGTCGAG
GCCGACGTGGTGGTGCTGGCCGGCGATATCCACAGCCACCTGGAAGGCCTGCACTGGGCCCGCGAGACCTTC
GCCGACAGCGAGATCGTCTACGTCGCCGGCAACCATGAGTTCTACTCCTCGGAAATGACCGACCTGACCCAG
GCGATGCGCAATATCGCCCGGGCGCTGGATATCCACTTCCTGGAAAACGACGAAGCGCGGATCGGCCCGGCG
CGCTTCCTCGGCGCCACCCTGTGGACCGACTTCCAGCTCTATGGCGCGGACGgCTATGCGCCCGCCCATGAG
CTGGCCCTGCAATCGATGCCGGACTTCAGCTGCATCGACTGGTTCGGCGGCGACTTCACCCCCGAGCAGAGC
ATCGCCCTGCACCGAGCCTCGCGCGACTGGCTCGCCGAACAGCTGGCGCGGCCCCACGACGGCCCGACGCTG
GTGGTCAGCCACCACGCGCCCAGTGCGCTGTCGATCCCGCCGCAGTTCGTCGGCAACCCGCTGTCGCCAGCC
TTCGCTTCCAACCTCGACGAACTGCTGGCGCAGGCCGACTACTGGCTGCACGGTCACGTCCACGATGCCCTC
GACTACCGCATCGGCCGGGCACGGGTGCTGGCCAATCCGGGCGGCTATCCCCACGAGAGAGGCGGGTTCCGT
CCGGAATTCGTCTTCGAGGTCTGA