ViewGene

Locus Name:
GeneID:
Location:

GeneID:309
TrivialName: PA14_19050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19050
PAO1 Ortholog Locus:PA3482
Sequence Length:2037
Protein Length:678
Start: 1646315
Stop: 1644279
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06870.1|AE004769_3 (AE004769) methionyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 675/678 (99%), Positives = 676/678 (99%), Gaps = 1/678 (0%)
Sequence:
ATGTCCGAACCACGCAAGATCCTCGTTACCAGCGCCCTCCCCTACGCCAACGGTTCCATTCACCTGGGACAC
ATGCTGGAGTACATCCAGACGGACATGTGGGTGCGCTTCCAGAAGATGCGTGGCAACCAGGCCGTCTACGTC
TGCGCCGACGACGCCCACGGTTCGGCGATCATGCTCCGCGCCGAGCGCGAGGGCATCACCTCCGAGCAACTG
ATCGACGCCGTGCGCGCCGAGCACATGGGCGACTTCGCCGACTTCCTGGTGGACTTCGACAACTACCACTCG
ACCCACTCGGAAGAGAACCGCGAGCTGTCCAGCGCGATCTACCTGAAACTGCGCGACGCCGGGCACATCGAC
ACCCGCCCGGTGACCCAGTACTTCGACCCGGAAAAGCAGATGTTCCTCGCCGACCGCTTCATCAAGGGCACC
TGCCCGAAGTGCGGCACCGCCGACCAGTACGGCGACAACTGCGAGGCCTGCGGCGCGACCTACGCCCCGACC
GAACTGAAGGACCCGAAATCGGCGATCTCCGGCGCCACCCCGGTGCTCAAGGAATCGCTGCACTACTTCTTC
AAGCTGCCGGACTTCGAGGCCATGCTCAAGCAATGGACCCGCAGCGGCGCCCTTCAGGAGTCGGTGGCCAAC
AAGCTCGCCGAGTGGCTGGACAGCGGCCTCCAGCAGTGGGACATCTCGCGCGACGCGCCGTACTTCGGCTTC
GAGATTCCCGACGCTCCCGGCAAGTACTTCTACGTCTGGCTGGACGCGCCGATCGGCTACATGGCCAGCTTC
AAGAACCTCTGCGCGCGGCGTCCCGAGCTGGACTTCGACGCGTTCTGGGGCAAGGACTCCAGTGCCGAGCTG
TACCACTTCATCGGCAAGGACATCGTCAACTTCCACGCGCTGTTCTGGCCGGCCATGCTCGAAGGCGCCGGC
TACCGCAAGCCGACCGCGCTGAACGTGCACGGCTACCTGACCGTGAACGGCCAGAAGATGTCCAAGTCGCGC
GGCACCTTCGTCAAGGCGCGCACCTACCTCGACCACCTGGACCCGGAATACCTGCGCTACTACTACGCCTCC
AAGCTCGGCCGCGGCGTCGAGGACCTCGACCTGAACCTCGAGGACTTCGTGCAGAAGGTCAACTCCGACCTG
GTCGGCAAGGTCGTCAACATCGCCAGCCGCTGCGCCGGCTTCATCCACAAGGGCAACGCCGGCGTGCTGGTC
GGCGCCGATCCTGCGCCGGAGCTGCTCGCCGCCTTCCGCGAGGCCGCACCGGGCATCGCCGAGGCCTATGAG
GCCCGCGACTTCAATCGCGCCATGCGCGAGATCATGGCCCTCGCCGACCGCGCCAACGCCTGGATCGCCGAA
CAGGCGCCCTGGGCGCTGGCCAAGCAGGAAGGCCAGCAGGACAAGGTCCAGGCCGTCTGCGGCCTGGGCATC
AACCTGTTCCGCCAGTTGGTGATCTTCCTCAAGCCGGTGCTGCCGAAGCTGGCCGCCGCCGCCGAAGCCTTC
CTCAACGTCGCCCCGCTGACCTGGGCCGACCACCGGACCCTGCTGGCCAACCACCAACTGAACCCGTTCCAG
CCCCTGATGACCCGTATCGAGCCCGCGAAAGTAGAAGCCATGATCGAAGCCTCCAAGGAAGACCTCGCCGCC
GCCGCATCCCAACCCGCCGGCAACGGCGAGCTGGTCAAGGAACCCATCGCCGCGGAGATCGACTTCGACGCT
TTCGCCGCGGTCGACCTGCGCATCGCCCTGATCGAGAAGTGCGAGTTCGTCGAAGGCGCCGACAAGCTGCTG
CGCCTGTCGCTGGACATCGGCGACGCGAAGCGTAACGTGTTCTCCGGGATCAAGAGCGCGTATCCCGACCCG
AGCGCCCTGGAAGGCCGCCTGACGCTCTATGTGGCCAACCTGGCGCCGCGCAAGATGAAGTTCGGGGTGTCC
GAGGGCATGGTCCTGGCCGCCGGCCCGGGTGGCGAGGAGATCTACCTGCTGAGTCCGGACAGCGGCGCCAAG
CCGGGCCAGCGCGTCAAGTAA
Translation:
MSEPRKILVTSALPYANGSIHLGHMLEYIQTDMWVRFQKMRGNQAVYVCADDAHGSAIMLRAEREGITSEQL
IDAVRAEHMGDFADFLVDFDNYHSTHSEENRELSSAIYLKLRDAGHIDTRPVTQYFDPEKQMFLADRFIKGT
CPKCGTADQYGDNCEACGATYAPTELKDPKSAISGATPVLKESLHYFFKLPDFEAMLKQWTRSGALQESVAN
KLAEWLDSGLQQWDISRDAPYFGFEIPDAPGKYFYVWLDAPIGYMASFKNLCARRPELDFDAFWGKDSSAEL
YHFIGKDIVNFHALFWPAMLEGAGYRKPTALNVHGYLTVNGQKMSKSRGTFVKARTYLDHLDPEYLRYYYAS
KLGRGVEDLDLNLEDFVQKVNSDLVGKVVNIASRCAGFIHKGNAGVLVGADPAPELLAAFREAAPGIAEAYE
ARDFNRAMREIMALADRANAWIAEQAPWALAKQEGQQDKVQAVCGLGINLFRQLVIFLKPVLPKLAAAAEAF
LNVAPLTWADHRTLLANHQLNPFQPLMTRIEPAKVEAMIEASKEDLAAAASQPAGNGELVKEPIAAEIDFDA
FAAVDLRIALIEKCEFVEGADKLLRLSLDIGDAKRNVFSGIKSAYPDPSALEGRLTLYVANLAPRKMKFGVS
EGMVLAAGPGGEEIYLLSPDSGAKPGQRVK*
AnnotationID:319GeneID:309
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 11:11:54
Gene Name:metG
Confidence Code:2
GeneProduct:methionyl-tRNA synthetase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:methionine-tRNA ligase
Functional Category Confidence Code:5
COGs:COG0143,cd00814
Secondary Functional Category(ies):
EC Number:6.1.1.10
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66722.1|AE016300_7 (AE016778) methionyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 679

 Score = 1182 bits (3058), Expect = 0.0
 Identities = 576/679 (84%), Positives = 622/679 (91%), Gaps = 1/679 (0%)

>gb|AAN81098.1|AE016763_57 (AE016763) Methionyl-tRNA synthetase [Escherichia coli CFT073]
          Length = 680

 Score =  914 bits (2361), Expect = 0.0
 Identities = 441/675 (65%), Positives = 542/675 (80%), Gaps = 4/675 (0%)

>gb|AAP17531.1| (AE016985) methionine tRNA synthetase [Shigella flexneri 2a str.
           2457T]
          Length = 677

 Score =  913 bits (2360), Expect = 0.0
 Identities = 441/675 (65%), Positives = 541/675 (80%), Gaps = 4/675 (0%)

Structural Features:
COG0143, MetG, Methionyl-tRNA synthetase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 558 residues, 100.0% aligned
Score =  659 bits (1702), Expect = 0.0
Identities = 240/561 (42%), Positives = 323/561 (57%), Gaps = 16/561 (2%)

cd00814, MetRS_core, This is the catalytic core domain of 
methionine tRNA synthetase (MetRS).
CD-Length = 364 residues,  99.7% aligned
Score =  412 bits (1060), Expect = 8e-116
Genomic Context:
Comment:
ReferenceID:621
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17763
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32062
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:309_cdd.html
URL:
ReferenceID:34101
Author/Investigator(s): Sienko M, Paszewski A.
Title: The metG gene of Aspergillus nidulans encoding cystathionine beta-lyase: cloning and analysis.
PubMed: 10467009
MedLine:
Source:
Curr Genet. 1999 Jul;35(6):638-46.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10467009
ReferenceID:34102
Author/Investigator(s): Old IG, Saint Girons I, Richaud C.
Title: Physical mapping of the scattered methionine genes on the Escherichia coli chromosome.
PubMed: 8501076
MedLine:
Source:
J Bacteriol. 1993 Jun;175(11):3689-91.

Erratum in:
    * J Bacteriol 1993 Oct;175(20):6736.

Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8501076
ReferenceID:34103
Author/Investigator(s): Dardel F, Panvert M, Blanquet S, Fayat G.
Title: Locations of the metG and mrp genes on the physical map of Escherichia coli.
PubMed: 1675209
MedLine:
Source:
J Bacteriol. 1991 Jun;173(11):3273.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1675209
ReferenceID:34104
Author/Investigator(s): Dardel F, Fayat G, Blanquet S.
Title: Molecular cloning and primary structure of the Escherichia coli methionyl-tRNA synthetase gene.
PubMed: 6094501
MedLine:
Source:
J Bacteriol. 1984 Dec;160(3):1115-22.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6094501
Homologs By Global Alignment
Gene ID:309

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
501 PA3482_tr translation of PA3482 678 99.55 99.70 1 3521.0
25351 gb|AAG06870.1|AE004769_3 (AE004769) methionyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] 678 99.55 99.70 1 3521.0
25352 gb|AAN66722.1|AE016300_7 (AE016778) methionyl-tRNA synthetase [Pseudomonas putida KT2440] 679 84.83 91.60 1 3060.0
25353 gb|AAO57603.1| (AE016870) methionyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] 682 83.87 90.76 4 3054.0
25354 gb|AAG57175.1|AE005437_10 (AE005437) methionine tRNA synthetase [Escherichia coli O157:H7 EDL933] 680 65.29 80.44 5 2370.0
GC ORFID: 43311How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3482Glimmer Score:
Start: 3307617Stop: 3309653
Length: 2037
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3482 translation of PA3482Homolog Bit Score 1360.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6110 (ORF: BLASTX 1172.0), t_PA3482 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGAACCACGCAAGATCCTCGTTACCAGCGCCCTCCCCTACGCCAACGGTTCCATTCACCTGGGACAC
ATGCTGGAGTACATCCAGACGGACATGTGGGTGCGCTTCCAGAAGATGCGTGGCAACCAGGCCGTCTACGTC
TGCGCCGACGACGCCCACGGTTCGGCGATCATGCTCCGCGCCGAGCGCGAGGGCATCACCTCCGAGCAACTG
ATCGACGCCGTGCGCGCCGAGCACATGGGCGACTTCGCCGACTTCCTGGTGGACTTCGACAACTACCACTCG
ACCCACTCGGAAGAGAACCGCGAGCTGTCCAGCGCGATCTACCTGAAACTGCGCGACGCCGGGCACATCGAC
ACCCGCCCGGTGACCCAGTACTTCGACCCGGAAAAGCAGATGTTCCTCGCCGACCGCTTCATCAAGGGCACC
TGCCCGAAGTGCGGCACCGCCGACCAGTACGGCGACAACTGCGAGGCCTGCGGCGCGACCTACGCCCCGACC
GAACTGAAGGACCCGAAATCGGCGATCTCCGGCGCCACCCCGGTGCTCAAGGAATCGCTGCACTACTTCTTC
AAGCTGCCGGACTTCGAGGCCATGCTCAAGCAATGGACCCGCAGCGGCGCCCTTCAGGAGTCGGTGGCCAAC
AAGCTCGCCGAGTGGCTGGACAGCGGCCTCCAGCAGTGGGACATCTCGCGCGACGCGCCGTACTTCGGCTTC
GAGATTCCCGACGCTCCCGGCAAGTACTTCTACGTCTGGCTGGACGCGCCGATCGGCTACATGGCCAGCTTC
AAGAACCTCTGCGCGCGGCGTCCCGAGCTGGACTTCGACGCGTTCTGGGGCAAGGACTCCAGTGCCGAGCTG
TACCACTTCATCGGCAAGGACATCGTCAACTTCCACGCGCTGTTCTGGCCGGCCATGCTCGAAGGCGCCGGC
TACCGCAAGCCGACCGCGCTGAACGTGCACGGCTACCTGACCGTGAACGGCCAGAAGATGTCCAAGTCGCGC
GGCACCTTCGTCAAGGCGCGCACCTACCTCGACCACCTGGACCCGGAATACCTGCGCTACTACTACGCCTCC
AAGCTCGGCCGCGGCGTCGAGGACCTCGACCTGAACCTCGAGGACTTCGTGCAGAAGGTCAACTCCGACCTG
GTCGGCAAGGTCGTCAACATCGCCAGCCGCTGCGCCGGCTTCATCCACAAGGGCAACGCCGGCGTGCTGGTC
GGCGCCGATCCTGCGCCGGAGCTGCTCGCCGCCTTCCGCGAGGCCGCACCGGGCATCGCCGAGGCCTATGAG
GCCCGCGACTTCAATCGCGCCATGCGCGAGATCATGGCCCTCGCCGACCGCGCCAACGCCTGGATCGCCGAA
CAGGCGCCCTGGGCGCTGGCCAAGCAGGAAGGCCAGCAGGACAAGGTCCAGGCCGTCTGCGGCCTGGGCATC
AACCTGTTCCGCCAGTTGGTGATCTTCCTCAAGCCGGTGCTGCCGAAGCTGGCCGCCGCCGCCGAAGCCTTC
CTCAACGTCGCCCCGCTGACCTGGGCCGACCACCGGACCCTGCTGGCCAACCACCAACTGAACCCGTTCCAG
CCCCTGATGACCCGTATCGAGCCCGCGAAAGTAGAAGCCATGATCGAAGCCTCCAAGGAAGACCTCGCCGCC
GCCGCATCCCAACCCGCCGGCAACGGCGAGCTGGTCAAGGAACCCATCGCCGCGGAGATCGACTTCGACGCT
TTCGCCGCGGTCGACCTGCGCATCGCCCTGATCGAGAAGTGCGAGTTCGTCGAAGGCGCCGACAAGCTGCTG
CGCCTGTCGCTGGACATCGGCGACGCGAAGCGTAACGTGTTCTCCGGGATCAAGAGCGCGTATCCCGACCCG
AGCGCCCTGGAAGGCCGCCTGACGCTCTATGTGGCCAACCTGGCGCCGCGCAAGATGAAGTTCGGGGTGTCC
GAGGGCATGGTCCTGGCCGCCGGCCCGGGTGGCGAGGAGATCTACCTGCTGAGTCCGGACAGCGGCGCCAAG
CCGGGCCAGCGCGTCAAGTAA